[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,646 items for (author: kim & t)

EMDB-55572:
Cryo-EM structure of ISCro4-DBL-TBL-tDNA-dDNA synaptic complex
Method: single particle / : Fernandez Carrera J, Pelea O, Gerecke SE, Chanez C, Jinek M

PDB-9t56:
Cryo-EM structure of ISCro4-DBL-TBL-tDNA-dDNA synaptic complex
Method: single particle / : Fernandez Carrera J, Pelea O, Gerecke SE, Chanez C, Jinek M

EMDB-72964:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-72965:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yha:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yhb:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-68389:
P301L/S320F human tau filaments from mouse brain
Method: single particle / : Yanagisawa H, Kano M, Kimura T, Kikkawa M, Tomita T

PDB-22jy:
P301L/S320F human tau filaments from mouse brain
Method: single particle / : Yanagisawa H, Kano M, Kimura T, Kikkawa M, Tomita T

EMDB-70288:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

PDB-9oal:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

EMDB-64036:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

PDB-9uc6:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

EMDB-43735:
Structure of a LGR dimer from Caenorhabditis elegans in apo state
Method: single particle / : Gong Z, Hendrickson WA

PDB-8w1z:
Structure of a LGR dimer from Caenorhabditis elegans in apo state
Method: single particle / : Gong Z, Hendrickson WA

EMDB-72076:
GluN1/GluN2A in complex with polyclonal autoantibody Fab fragments (class 1), glycine- and glutamate-bound state
Method: single particle / : Kim J, Jalali-Yazdi F, Gouaux E

EMDB-72077:
GluN1/GluN2A in complex with polyclonal autoantibody Fab fragments (class 2), glycine- and glutamate-bound state
Method: single particle / : Kim J, Jalali-Yazdi F, Gouaux E

EMDB-72078:
Native GluN1/GluN2A/GluN2B in complex with 5F11 and 3D2 Fabs (class 1), glycine and glutamate bound state
Method: single particle / : Kim J, Gouaux E

EMDB-72079:
Native GluN1/GluN2A/GluNx in complex with 5F11 and 3D2 Fabs (class 2), glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

EMDB-72080:
Native GluN1/GluN2A in complex with 5F11 and 3D2 Fabs (class 3), glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

EMDB-72081:
Native GluN1/GluN2B in complex with 5F11 Fab (class 4), glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

EMDB-72082:
Native GluN1/GluNx in complex with 5F11 Fab (class 5), glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

EMDB-72083:
Native GluN1/GluN2A in complex with 5F11 and 3D2 Fabs, local ATD dimer
Method: single particle / : Kim J, Gouaux E

EMDB-72084:
GluN1/GluN2A in complex with 3D2 Fab, glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

EMDB-72085:
GluN1/GluN2A in complex with 3D2 Fab, local ATD dimer
Method: single particle / : Kim J, Gouaux E

PDB-9pzq:
GluN1/GluN2A in complex with polyclonal autoantibody Fab fragments (class 1), glycine- and glutamate-bound state
Method: single particle / : Kim J, Jalali-Yazdi F, Gouaux E

PDB-9pzr:
GluN1/GluN2A in complex with polyclonal autoantibody Fab fragments (class 2), glycine- and glutamate-bound state
Method: single particle / : Kim J, Jalali-Yazdi F, Gouaux E

PDB-9pzs:
Native GluN1/GluN2A/GluN2B in complex with 5F11 and 3D2 Fabs (class 1), glycine and glutamate bound state
Method: single particle / : Kim J, Gouaux E

PDB-9pzt:
Native GluN1/GluN2A in complex with 5F11 and 3D2 Fabs (class 3), glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

PDB-9pzu:
Native GluN1/GluN2B in complex with 5F11 Fab (class 4), glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

PDB-9pzv:
Native GluN1/GluN2A in complex with 5F11 and 3D2 Fabs, local ATD dimer
Method: single particle / : Kim J, Gouaux E

PDB-9pzw:
GluN1/GluN2A in complex with 3D2 Fab, glycine and glutamate-bound state
Method: single particle / : Kim J, Gouaux E

PDB-9pzx:
GluN1/GluN2A in complex with 3D2 Fab, local ATD dimer
Method: single particle / : Kim J, Gouaux E

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-71884:
10E8-GT10.2 immunogen in complex with mouse Fab W6-10 and rhesus macaque Fab W10-09
Method: single particle / : Huang J, Ward AB

EMDB-71885:
10E8-GT10.2 immunogen in complex with Rhesus macaque Fab W3-02 and mouse Fab W6-03
Method: single particle / : Huang J, Ward AB

EMDB-49059:
L9-targeting immunogen bound to three copies of L9 Fab
Method: single particle / : Garfinkle SE, Lin ZJ, Pallesen J

PDB-9n6e:
L9-targeting immunogen bound to three copies of L9 Fab
Method: single particle / : Garfinkle SE, Lin ZJ, Pallesen J

EMDB-48421:
Band 3 OF/IF1
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-48422:
Band 3 OF/OF
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-48480:
Band 3 IF1/IF2
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mnd:
Band 3 OF/IF1
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mng:
Band 3 OF/OF
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mos:
Band 3 IF1/IF2
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-71801:
Cryo ET of Native Hippocampal Glutamatergic Synapses Using Dimeric AuNP Labeling
Method: electron tomography / : Kim H, Spangler CJ, Matsui A, Elferich J, Gouaux E

EMDB-71954:
Cryo ET of Native Hippocampal Glutamatergic Synapses Using Dimeric AuNP Labeling 2
Method: electron tomography / : Kim H, Spangler CJ, Matsui A, Elferich J, Gouaux E

EMDB-71955:
Cryo ET of Native Hippocampal Glutamatergic Synapses Using Dimeric AuNP Labeling 3
Method: electron tomography / : Kim H, Spangler CJ, Matsui A, Elferich J, Gouaux E

EMDB-71956:
Cryo ET of Native Hippocampal Glutamatergic Synapses Using Dimeric AuNP Labeling 4
Method: electron tomography / : Kim H, Spangler CJ, Matsui A, Elferich J, Gouaux E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more