[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 130 items for (author: johnson & sm)

EMDB-48407:
E. coli GroEL bound with ATP and PBZ1587 inhibitor
Method: single particle / : Johnson SM, Chen Q

EMDB-48408:
E. coli SR1 single-ring GroEL oligomer
Method: single particle / : Johnson SM, Chen Q

EMDB-48409:
E. coli SR1 single-ring GroEL templated into pseudo-double-ring complex with PBZ1587 inhibitor
Method: single particle / : Johnson SM, Chen Q

EMDB-48410:
E. coli SR1 single-ring GroEL oligomer
Method: single particle / : Johnson SM, Chen Q

EMDB-48411:
E. coli GroES-GroEL-GroES football complex
Method: single particle / : Johnson SM, Chen Q

EMDB-48331:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

PDB-9mkn:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

EMDB-52210:
TRPML1 in complex with compound 2
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52211:
TRPML1 in complex with compound 5
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52242:
TRPML1 in complex with compound 1a
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52243:
TRPML1 in complex with compound 3
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52245:
TRPML1 in complex with compound 4a
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52246:
TRPML1 in complex with compound 8
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52248:
TRPML1 in complex with compound 9a
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52249:
TRPML1 in complex with compound 10
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52250:
TRPML1 in complex with compound 11
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52251:
TRPML1 in complex with compound 13
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-44306:
Cryo-EM structure of human dynactin complex bound to Chlamydia effector Dre1
Method: single particle / : Pawar KI, Verba KA

EMDB-44333:
Cryo-EM structure of human dynactin complex bound to Chlamydia effector Dre1
Method: single particle / : Pawar KI, Verba KA

PDB-9b7j:
Cryo-EM structure of human dynactin complex bound to Chlamydia effector Dre1
Method: single particle / : Pawar KI, Verba KA

PDB-9b85:
Cryo-EM structure of human dynactin complex bound to Chlamydia effector Dre1
Method: single particle / : Pawar KI, Verba KA

EMDB-43757:
Cas9d Effector:sgRNA Binary Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

EMDB-43760:
Cas9d 6bp R-loop Seed Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

EMDB-43878:
Cas9d 20bp R-loop Complex
Method: single particle / : Fregoso Ocampo R, Taylor DW, Bravo JPK

PDB-8w2s:
Cas9d Effector:sgRNA Binary Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

PDB-8w2z:
Cas9d 6bp R-loop Seed Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

PDB-9auf:
Cas9d 20bp R-loop Complex
Method: single particle / : Fregoso Ocampo R, Taylor DW, Bravo JPK

EMDB-45764:
CryoEM structure of the APO-BAM complex in DDM detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45765:
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45766:
CryoEM structure of the APO-BAM complex in SMA nanodisc
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45767:
Structure of BAM complexed with PTB2 ligand in detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45768:
CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnw:
CryoEM structure of the APO-BAM complex in DDM detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnx:
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cny:
CryoEM structure of the APO-BAM complex in SMA nanodisc
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnz:
Structure of BAM complexed with PTB2 ligand in detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9co0:
CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-43667:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-43670:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, global refinement
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-43671:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, local refinement
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-43672:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

PDB-8vym:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

PDB-8vyn:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-45078:
E.coli GroEL + PBZ1587 inhibitor
Method: single particle / : Watson ER, Lander GC

EMDB-45079:
E.coli GroEL apoenzyme
Method: single particle / : Watson ER, Lander GC

EMDB-45080:
E.Faecium GroEL
Method: single particle / : Watson ER, Lander GC

EMDB-45098:
E.coli GroEL + PBZ1587 inhibitor C1 reconstruction
Method: single particle / : Watson ER, Lander GC

EMDB-42139:
Cryo-EM structure of the flagellar MotAB stator bound to FliG
Method: single particle / : Deme JC, Johnson S, Lea SM

EMDB-42376:
Cryo-EM structure of a single subunit of a Counterclockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Method: single particle / : Johnson S, Deme JC, Lea SM

EMDB-42387:
Cryo-EM structure of a single subunit of a Clockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Method: single particle / : Johnson S, Deme JC, Lea SM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more