[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,075 items for (author: jin & ss)

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G

EMDB-65360:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65361:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65362:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-56607:
CryoEM structure of guanidinase from Nitrospira inopinata
Method: single particle / : Prokhorova I, Lecomte L, Papp G, Schreiner C, Djinovic-Carugo K

EMDB-56821:
C.t. INO80 chromatin remodeler bound to nucleosome
Method: single particle / : Lecomte L, Grozavu DM, Kolesnikova O, Eustermann S

EMDB-56855:
Cryo-EM structure of yeast ribosome solved with EasyGrid
Method: single particle / : Gemin O, Papp G

EMDB-73803:
Cryo-EM structure of human Wntless in complex with Wnt5a at 1:1 stoichiometry
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Wang Z, Salic A, Jiang J, Huang P

EMDB-73810:
Cryo-EM structure of human Wntless in its apo state
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73835:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Focused map A
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73836:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Focused map B
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73837:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Consensus map
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73838:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Composite map
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-70905:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan
Method: single particle / : Jin M, Rini JM

PDB-9ovp:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan
Method: single particle / : Jin M, Rini JM

EMDB-72972:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yhs:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-70380:
Zebrafish Abcb4 in IF-narrow conformation (IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70381:
Zebrafish Abcb4 in IF-Wide conformation (IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70382:
Zebrafish Abcb4 in IF-Medium conformation (IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70383:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Tariquidar (TQR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70384:
Zebrafish Abcb4 in IF-medium conformation in the presence of Tariquidar (TQR-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70385:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Tariquidar (TQR-IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70386:
Zebrafish Abcb4 in IF-Narrow conformation in the presence of Elacridar (ELA-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70387:
Zebrafish Abcb4 in IF-Medium conformation in the presence of Elacridar (ELA-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70388:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Elacridar (ELA-IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70389:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Vincristine (VCR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70390:
Zebrafish Abcb4 in IF-medium conformation in the presence of Vincristine (VCR-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70391:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Vincristine (VCR-IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9ody:
Zebrafish Abcb4 in IF-narrow conformation (IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9odz:
Zebrafish Abcb4 in IF-Wide conformation (IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9oe0:
Zebrafish Abcb4 in IF-Medium conformation (IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe1:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Tariquidar (TQR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe2:
Zebrafish Abcb4 in IF-medium conformation in the presence of Tariquidar (TQR-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe3:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Tariquidar (TQR-IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9oe4:
Zebrafish Abcb4 in IF-Narrow conformation in the presence of Elacridar (ELA-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe5:
Zebrafish Abcb4 in IF-Medium conformation in the presence of Elacridar (ELA-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe6:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Elacridar (ELA-IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9oe7:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Vincristine (VCR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe8:
Zebrafish Abcb4 in IF-medium conformation in the presence of Vincristine (VCR-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe9:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Vincristine (VCR-IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70900:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (D1 domain local refine)
Method: single particle / : Jin M, Rini JM

EMDB-70901:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan
Method: single particle / : Jin M, Rini JM

EMDB-70902:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein (local refined D1 domain)
Method: single particle / : Jin M, Rini JM

EMDB-70903:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein
Method: single particle / : Jin M, Rini JM

EMDB-70904:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (Local refined D1 domain)
Method: single particle / : Jin M, Rini JM

PDB-9ovk:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (D1 domain local refine)
Method: single particle / : Jin M, Rini JM

PDB-9ovl:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan
Method: single particle / : Jin M, Rini JM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more