[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 47 items for (author: jardine & p)

EMDB-49361:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*02
Method: single particle / : Maso L

EMDB-49362:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*03
Method: single particle / : Maso L

PDB-9nfb:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*02
Method: single particle / : Maso L

PDB-9nfc:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*03
Method: single particle / : Maso L

EMDB-43792:
phi29 empty capsid lacking pentons and portal
Method: single particle / : Woodson ME, Morais MC, Seth S, Zhang W, Jardine PJ

EMDB-43793:
phi29 empty capsid maturation intermediate with wild-type pRNA
Method: single particle / : Woodson ME, Morais MC, Zhang W, Jardine PJ

EMDB-45728:
Structure of ecarin from the venom of Kenyan saw-scaled viper in complex with the Fab of neutralizing antibody H11
Method: single particle / : Mindrebo JT, Lander GC

PDB-9clp:
Structure of ecarin from the venom of Kenyan saw-scaled viper in complex with the Fab of neutralizing antibody H11
Method: single particle / : Mindrebo JT, Lander GC

EMDB-28820:
phi-29 prohead MCP gp8 penton maturation intermediate, with associated scaffold gp7 tetramer
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Zhang W, Prokhorov NS

EMDB-28821:
bacteriophage phi-29 MCP gp-8 penton in intermediate maturation state, with associated scaffold gp7 dimer
Method: single particle / : Woodson ME, Morais MC, Prokhorov NS, Zhang W, Jardine PJ

EMDB-28822:
Phi-29 scaffolding protein bound to intermediate-state MCP
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Scott SD

EMDB-28823:
Phi-29 partially-expanded fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Scott SD, Choi KH, Jardine PJ, Zhang W

EMDB-28824:
Phi-29 expanded, DNA-packaged fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Zhang W

PDB-8f2m:
Phi-29 scaffolding protein bound to intermediate-state MCP
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Scott SD

PDB-8f2n:
Phi-29 partially-expanded fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Scott SD, Choi KH, Jardine PJ, Zhang W

PDB-8f2o:
Phi-29 expanded, DNA-packaged fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Zhang W

EMDB-27692:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-27693:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (global refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-8dt8:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24693:
SARS-CoV-2-6P-Mut7 S protein (C3 symmetry)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24694:
SARS-CoV-2-6P-Mut7 S protein (asymmetric)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24695:
CC6.33 IgG in complex with SARS-CoV-2-6P-Mut7 S protein (non-uniform refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24696:
CC6.33 IgG in complex with SARS-CoV-2-6P-Mut7 S protein (RBD/Fv local refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24697:
CC6.30 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (non-uniform refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24699:
CC6.30 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (RBD/Fv local refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru1:
SARS-CoV-2-6P-Mut7 S protein (C3 symmetry)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru2:
SARS-CoV-2-6P-Mut7 S protein (asymmetric)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru3:
CC6.33 IgG in complex with SARS-CoV-2-6P-Mut7 S protein (non-uniform refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru4:
CC6.33 IgG in complex with SARS-CoV-2-6P-Mut7 S protein (RBD/Fv local refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru5:
CC6.30 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (non-uniform refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru8:
CC6.30 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (RBD/Fv local refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-22099:
HK97 prohead during packaging (sym5)
Method: single particle / : Fung HKH, Grimes S, Huet A, Duda RLD, Chechick M, Gault J, Robinson CV, Jardine PJ, Conway JF, Baumann CG, Antson AA

EMDB-22100:
Hk97 prohead during packaging (sym6)
Method: single particle / : Fung HKH, Grimes S, Huet A, Duda RLD, Chechick M, Gault J, Robinson CV, Jardine PJ, Conway JF, Baumann CG, Antson AA

EMDB-22101:
prohead of HK97 for packaging
Method: single particle / : Fung HKH, Grimes S, Huet A, Duda RLD, Chechick M, Gault J, Robinson CV, Jardine PJ, Conway JF, Baumann CG, Antson AA

EMDB-22441:
The bacteriophage Phi-29 viral genome packaging motor assembly
Method: single particle / : White MA, Woodson M

PDB-7jqq:
The bacteriophage Phi-29 viral genome packaging motor assembly
Method: single particle / : White MA, Woodson M, Morais MC

EMDB-8181:
Broadly neutralizing antibody PGDM14 in complex with BG505 SOSIP.664 Env trimer
Method: single particle / : Lee JH, Ward AB

EMDB-8182:
Broadly neutralizing antibody PGDM21 in complex with BG505 SOSIP.664 Env trimer
Method: single particle / : Lee JH, Ward AB

EMDB-6560:
Bacteriophage phi29 prohead particle stalled during DNA packaging
Method: single particle / : Mao H, Saha M, Reyes-Aldrete E, Sherman M, Woodson M, Jardine PJ, Grimes S, Morais M

EMDB-5451:
Bacteriophage phi29 prohead particle with a single insertion mutation (U92) in the pRNA
Method: single particle / : Zhao W, Saha M, Ke A, Morais M, Jardine PJ, Grimes S

EMDB-2162:
Structure of bacteriophage phi29 prohead particle with a double insertion mutation (U92,U93) in the pRNA
Method: single particle / : Zhao W, Saha M, Ke A, Morais MC, Jardine PJ, Grimes S

EMDB-1419:
DNA poised for release in bacteriophage phi29.
Method: single particle / : Tang J, Olson N, Jardine P, Grimes S, Anderson D, Baker T

EMDB-1420:
DNA poised for release in bacteriophage phi29.
Method: single particle / : Tang J, Olson N, Jardine P, Grimes S, Anderson D, Baker T

EMDB-1266:
Structural changes of bacteriophage phi29 upon DNA packaging and release.
Method: single particle / : Xiang Y, Morais MC, Battisti AJ, Grimes S, Jardine PJ, Anderson DL, Rossmann MG

EMDB-1260:
Structural changes of bacteriophage phi29 upon DNA packaging and release.
Method: single particle / : Xiang Y, Morais MC, Battisti AJ, Grimes S, Jardine PJ, Anderson DL, Rossmann MG

EMDB-1265:
Structural changes of bacteriophage phi29 upon DNA packaging and release.
Method: single particle / : Xiang Y, Morais MC, Battisti AJ, Grimes S, Jardine PJ, Anderson DL, Rossmann MG

PDB-1foq:
PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA
Method: single particle / : Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann MG

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more