[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 65 items for (author: holden & d)

EMDB-54651:
Unliganded tetramer of Glycogen phosphorylase from E. coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54650:
Unliganded dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54658:
Complexed dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54663:
Complexed tetramer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-18416:
Cryo-EM structure of the monocin tail-tube, MttP.
Method: helical / : Nadejda S, Lichtenstein R, Schlussel S, Azulay G, Borovok I, Holdengraber V, Elad N, Wolf SG, Zalk R, Zarivach R, Frank GA, Herskovits AA

PDB-8qhs:
Cryo-EM structure of the monocin tail-tube, MttP.
Method: helical / : Nadejda S, Lichtenstein R, Schlussel S, Azulay G, Borovok I, Holdengraber V, Elad N, Wolf SG, Zalk R, Zarivach R, Frank GA, Herskovits AA

EMDB-17047:
Virus-like Particle based on PVY coat protein with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8opb:
Virus-like Particle based on PVY coat protein with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17046:
Virus-like Particle based on PVY coat protein with stacked-ring architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17048:
Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17049:
Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17050:
Virus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17051:
Virus-like Particle based on PVY coat protein with dC60 deletion with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17052:
Virus-like Particle based on PVY coat protein with dC79 deletion with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17053:
Head-to-tail double ring assembly from truncated PVY coat protein
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17054:
RNA-free helical assembly from truncated PVY coat protein
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17055:
Stacked-ring assembly from truncated PVY coat protein
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17056:
Stacked-ring assembly from truncated PVY coat protein with L99C mutation
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17057:
Helical assembly from truncated PVY coat protein with L99C mutation
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17058:
Helical assembly from truncated PVY coat protein with K153E mutation
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17059:
Cross-shaped junction assembly from truncated PVY coat protein with E150C mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17060:
Global refinement map of head-to-head double ring assembly from truncated PVY coat protein with K176E mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17061:
Local refinement map of head-to-head double ring assembly from truncated PVY coat protein with K176E mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17062:
Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17063:
Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17064:
Spherical assembly from truncated PVY coat protein with K177E mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17065:
Cubic assembly from truncated PVY coat protein with K176C mutation and removed His tag
Method: single particle / : Kavcic L, Kezar A, Podobnik M

EMDB-17066:
Virus-like Particle based on PVY coat protein with L99C and K176C mutation with stacked-ring architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17067:
Virus-like Particle based on PVY coat protein with L99C and K176C mutation with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17068:
Virus-like Particle based on PVY coat protein with E150C and G193C mutation with stacked-ring architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17069:
Virus-like Particle based on PVY coat protein with E150C and G193C mutation with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17070:
Virus-like Particle based on PVY coat protein with S39C and E72C mutation with stacked-ring architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17071:
Virus-like Particle based on PVY coat protein with S39C and E72C mutation with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17072:
Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17073:
Virus-like Particle based on PVY coat protein with D136C mutation with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17074:
Virus-like Particle based on PVY coat protein with R46A mutation with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-17075:
Virus-like Particle based on PVY coat protein with E139A mutation with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8opa:
Virus-like Particle based on PVY coat protein with stacked-ring architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8opc:
Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8opd:
Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8ope:
Virus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8opf:
Virus-like Particle based on PVY coat protein with dC60 deletion with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8opg:
Virus-like Particle based on PVY coat protein with dC79 deletion with RNA-free helical architecture
Method: helical / : Kavcic L, Kezar A, Podobnik M

PDB-8oph:
Head-to-tail double ring assembly from truncated PVY coat protein
Method: single particle / : Kavcic L, Kezar A, Podobnik M

PDB-8opj:
Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

PDB-8opk:
Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Method: single particle / : Kavcic L, Kezar A, Podobnik M

PDB-8opl:
Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA
Method: helical / : Kavcic L, Kezar A, Podobnik M

EMDB-25162:
HtrA1:Fab15H6.v4 complex
Method: single particle / : Gerhardy S, Green E

EMDB-25163:
HtrA1S328A:Fab15H6.v4 complex
Method: single particle / : Gerhardy S, Green E

PDB-7sjn:
HtrA1:Fab15H6.v4 complex
Method: single particle / : Gerhardy S, Green E, Estevez A, Arthur CP, Ultsch M, Rohou A, Kirchhofer D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more