[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 78 items for (author: hirano & h)

EMDB-61746:
Cryo-EM structure of PTH-PTH1R-Gq (upright state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61747:
Cryo-EM structure of PTH-PTH1R-Gq (tilted state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61795:
Cryo-EM structure of PTH-PTH1R-Gq complex (upright state; consensus refinement)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61796:
Cryo-EM structure of PTH-PTH1R-Gq complex (upright state; receptor focused refinement)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61797:
Cryo-EM structure of PTH-PTH1R-Gq complex (tilted state; consensus refinement map)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61798:
Cryo-EM structure of PTH-PTH1R-Gq complex (tilted state; focused refinement map)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

PDB-9jr2:
Cryo-EM structure of PTH-PTH1R-Gq (upright state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

PDB-9jr3:
Cryo-EM structure of PTH-PTH1R-Gq (tilted state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-43729:
Structure of Selenomonas sp. Cascade (SsCascade)
Method: single particle / : Hirano S, Zhang F

PDB-8w1p:
Structure of Selenomonas sp. Cascade (SsCascade)
Method: single particle / : Hirano S, Zhang F

EMDB-37112:
Cryo-EM structure of human SIDT1 bound to cholesterol
Method: single particle / : Hirano Y, Ohto U, Shimizu T

EMDB-37113:
Cryo-EM structure of human SIDT1
Method: single particle / : Hirano Y, Ohto U, Shimizu T

PDB-8kcw:
Cryo-EM structure of human SIDT1 bound to cholesterol
Method: single particle / : Hirano Y, Ohto U, Shimizu T

PDB-8kcx:
Cryo-EM structure of human SIDT1
Method: single particle / : Hirano Y, Ohto U, Shimizu T

EMDB-37858:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-37859:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-37860:
SpCas9-pegRNA-target DNA complex (pre-initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-37861:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-39253:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wus:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wut:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wuu:
SpCas9-pegRNA-target DNA complex (pre-initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wuv:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8ygj:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-18699:
Human H3 nucleosome assembled on alpha-satellite DNA (Class1: most wrapped DNA)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18714:
Human H3 nucleosome assembled on alpha-satellite DNA (most unwrapped)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18739:
Human CENP-A nucleosome assembled on alpha-satellite DNA (most wrapped DNA)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18740:
Human CENP-A nucleosome assembled on alpha-satellite DNA (partially unwrapped)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18745:
Human Cenp-A nucleosome assembled on alpha-satellite DNA (most unwrapped DNA)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18753:
Human CENP-A nucleosome assembled on alpha-satellite DNA in complex with CENP-B (most wrapped DNA)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18763:
Human CENP-A nucleosome assembled on alpha-satellite DNA in complex with CENP-B (partially unwrapped DNA)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18768:
Human CENP-A nucleosome assembled on alpha-satellite DNA (most unwrapped DNA)
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18775:
Human CENP-A nucleosome assembled on 601 DNA with CENP-B box
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-18776:
Human CENP-A nucleosome assembled on 601 DNA with CENP-B box in complex with CENP-B
Method: single particle / : Ali-Ahmad A, Sekulic N

EMDB-35912:
Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

EMDB-35926:
Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

EMDB-35965:
Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

PDB-8j12:
Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

PDB-8j1j:
Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

PDB-8j3r:
Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

EMDB-34803:
Cryo-EM structure of the Cas12m2-crRNA-target DNA full R-loop complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34804:
Cryo-EM structure of the Cas12m2-crRNA-target DNA ternary complex intermediate state
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34824:
Cryo-EM structure of the Cas12m2-crRNA binary complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

PDB-8hhl:
Cryo-EM structure of the Cas12m2-crRNA-target DNA full R-loop complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

PDB-8hhm:
Cryo-EM structure of the Cas12m2-crRNA-target DNA ternary complex intermediate state
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

PDB-8hio:
Cryo-EM structure of the Cas12m2-crRNA binary complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34428:
Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex
Method: single particle / : Nakagawa R, Hirano H, Omura S, Nureki O

PDB-8h1j:
Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex
Method: single particle / : Nakagawa R, Hirano H, Omura S, Nureki O

EMDB-34415:
RNA polymerase II transcribing a chromatosome (type I)
Method: single particle / : Hirano R, Ehara H, Tomoya K, Takizawa Y, Sekine S, Kurumizaka H

EMDB-34416:
RNA polymerase II transcribing a chromatosome (type II)
Method: single particle / : Hirano R, Ehara H, Tomoya K, Takizawa Y, Sekine S, Kurumizaka H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more