[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 146 items for (author: hill & rc)

EMDB-55723:
Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56449:
Consensus map of A2AR-beta-lactamase fusion + BLIPII
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56450:
Focused map on beta-lactamase + BLIPII region
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56451:
A2AR-focused map, with ligand ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

PDB-9t9p:
Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-52773:
LpDE from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

EMDB-52777:
LpDE from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

EMDB-52778:
LpDEM from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

EMDB-52779:
LpDEM from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

PDB-9i9z:
LpDE from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

PDB-9ia0:
LpDE from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

PDB-9ia2:
LpDEM from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

PDB-9ia5:
LpDEM from Escherichia coli
Method: single particle / : Siroy R, Fronzes R, Ieva R

EMDB-54584:
Arabidopsis thaliana TPLATE complex negative stain EM map
Method: single particle / : Kraus JM, Van Damme D, Pleskot R, Neubergerova M

EMDB-48724:
Lecithin:Cholesterol Acyltransferase Bound to Apolipoprotein A-I dimer in HDL
Method: single particle / : Coleman B, Bedi S, Hill JH, Morris J, Manthei KA, Hart RC, He Y, Shah AS, Jerome WG, Vaisar T, Bornfeldt KE, Song H, Segrest JP, Heinecke JW, Aller SG, Tesmer JJG, Davidson S

EMDB-50089:
CryoEM structure of the contracted sheath in H. borinquense
Method: helical / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51202:
Cryo-electron tomogram of H. borinquense showing contracted T6SS complex
Method: electron tomography / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51203:
Cryo-electron tomogram of H. borinquense showing extended T6SS complex
Method: electron tomography / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51204:
Cryo-electron tomogram of H. elongans showing contracted T6SS complex
Method: electron tomography / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51205:
Cryo-electron tomogram of H. elongans showing extended T6SS complex
Method: electron tomography / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51206:
Sub-tomogram average of contracted sheath complex in H. borinquense with C6 symmetry.
Method: subtomogram averaging / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51207:
Sub-tomogram average of extended sheath complex in H. borinquense with C6 symmetry
Method: subtomogram averaging / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51208:
Sub-tomogram average of extended baseplate complex in H. borinquense without imposing symmetry
Method: subtomogram averaging / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-51209:
Sub-tomogram average of extended baseplate complex in H. borinquense with C6 symmetry
Method: subtomogram averaging / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

PDB-9ezm:
CryoEM structure of the contracted sheath in H. borinquense
Method: helical / : Zachs T, Malit JJ, Xu J, Schuerch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M

EMDB-45863:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 3 closed RBDs
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45864:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 1 open RBD
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45865:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 3 closed RBDs
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45866:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 1 open RBD
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45867:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Gamma (P.1) variant 3 closed RBDs
Method: single particle / : Ke Z, Kotecha A, Briggs JAG

EMDB-45868:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Delta (B.1.617.2) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG, Saphire EO

EMDB-45869:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Mu (B.1.621) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG, Saphire EO

PDB-9crc:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 3 closed RBDs
Method: single particle / : Ke Z, Croll TI, Briggs JAG

PDB-9crd:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 1 open RBD
Method: single particle / : Ke Z, Croll TI, Briggs JAG

PDB-9cre:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 3 closed RBDs
Method: single particle / : Ke Z, Croll TI, Briggs JAG

PDB-9crf:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 1 open RBD
Method: single particle / : Ke Z, Croll TI, Briggs JAG

PDB-9crg:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Gamma (P.1) variant 3 closed RBDs
Method: single particle / : Ke Z, Kotecha A, Briggs JAG

PDB-9crh:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Delta (B.1.617.2) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG

PDB-9cri:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Mu (B.1.621) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG

EMDB-16904:
Structure of the MlaCD complex (1:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-16913:
Structure of the MlaCD complex (2:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-19406:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 12
Method: single particle / : Shilliday F, Lucas SCC, Richter M, Michaelides IN, Fusani L

EMDB-19407:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 24
Method: single particle / : Shilliday F, Lucas SCC, Richter M, Michaelides IN, Fusani L

PDB-8rox:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 12
Method: single particle / : Shilliday F, Lucas SCC, Richter M, Michaelides IN, Fusani L

PDB-8roy:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 24
Method: single particle / : Shilliday F, Lucas SCC, Richter M, Michaelides IN, Fusani L

EMDB-17350:
Single particle cryo-EM co-structure of Klebsiella pneumoniae AcrB with the BDM91288 efflux pump inhibitor at 2.97 Angstrom resolution
Method: single particle / : Boernsen C, Mueller RT, Pos KM, Frangakis AS

EMDB-16657:
Cryo-EM structure of the fd bacteriophage capsid major coat protein pVIII
Method: helical / : Boehning J, Bharat TAM

PDB-8ch5:
Cryo-EM structure of the fd bacteriophage capsid major coat protein pVIII
Method: helical / : Boehning J, Bharat TAM

EMDB-27847:
Mouse norovirus strain CR6, attenuated
Method: single particle / : Smith TJ, Sherman M

EMDB-27849:
Mouse norovirus strain CR6 at pH 5.0
Method: single particle / : Smith TJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more