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Showing all 48 items for (author: funabiki & h)

EMDB-70473:
Cryo-EM analysis of human H2A.Z on methylated Sat2R-P DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-70474:
Cryo-EM analysis of human H2A.Z on Sat2R-P DNA (v1)
Method: single particle / : Shih RM, Arimura Y

EMDB-70480:
Cryo-EM analysis of human H2A.Z on 601L DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-70481:
Cryo-EM analysis of human H2A.Z on methylated 601L DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-43238:
NPM2-H1.8 isolated from Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

EMDB-43239:
NPM2-H1.8 isolated from Xenopus egg extract (Bent form)
Method: single particle / : Arimura Y, Funabiki H

EMDB-43240:
NPM2-H1.8 isolated from Xenopus egg extract (Stretched form)
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhi:
NPM2-H1.8 isolated from Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhj:
NPM2-H1.8 isolated from Xenopus egg extract (Bent form)
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhk:
NPM2-H1.8 isolated from Xenopus egg extract (Stretched form)
Method: single particle / : Arimura Y, Funabiki H

EMDB-38198:
hCDCA7 bound to nucleosome with hemimethylated CpG in 3'-linker DNA
Method: single particle / : Hiruta M, Shikimachi R, Kikuchi A, Nishiyama A, Funabiki H, Arita K

EMDB-38199:
hCDCA7 in complexed with linker DNA including hemimethylated CpG
Method: single particle / : Hiruta M, Shikimachi R, Kikuchi A, Nishiyama A, Funabiki H, Arita K

EMDB-42594:
MagIC-cryo-EM of H1.8-GFP nucleosome isolated from Xenopus egg extract (interphase and metaphase data are mixed)
Method: single particle / : Arimura Y, Funabiki H

EMDB-42596:
MagIC-cryo-EM of the H1.8-GFP nucleosome formed in the Xenopus egg extract interphase chromosomes
Method: single particle / : Arimura Y, Funabiki H

EMDB-42597:
MagIC-cryo-EM of the H1.8-GFP nucleosome formed in the Xenopus egg extract metaphase chromosomes
Method: single particle / : Arimura Y, Funabiki H

EMDB-42598:
MagIC-cryo-EM of the Xenopus H1.8-GFP nucleosome reconstituted in vitro
Method: single particle / : Arimura Y, Funabiki H

EMDB-42599:
Nucleosome in polynucleosome attached on magnetic beads
Method: single particle / : Arimura Y, Funabiki H

EMDB-39594:
Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Method: single particle / : Kikuchi A, Shikimachi R, Nishiyama A, Funabiki H, Arita K

PDB-8yv8:
Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Method: single particle / : Kikuchi A, Shikimachi R, Nishiyama A, Funabiki H, Arita K

EMDB-24847:
Locally refined protomer structure of native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

EMDB-24848:
Native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

EMDB-24849:
Intermediate-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

PDB-7s62:
Locally refined protomer structure of native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

PDB-7s63:
Native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

PDB-7s64:
Intermediate-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

EMDB-22790:
Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22791:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22792:
H1.8 bound nucleosome isolated from metaphase chromosome in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22793:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (oligo fraction) (unbiased reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22794:
Alpha2-macroglobulin family protein isolated from interphase chromosome formed in Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

EMDB-22795:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction) (unbiased reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22796:
Alpha2-macroglobulin family protein isolated from metaphase chromosome formed in Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

EMDB-22797:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (mono fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22798:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (di fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22800:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (mono fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22801:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (di fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23819:
Nucleosome isolated from the interphase chromosome (oligo fraction, egg extract lot 2)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23820:
Nucleosome isolated from the interphase chromosome (oligo fraction, egg extract lot 2, simultaneous structures reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23821:
Nucleosome isolated from the metaphase chromosome (oligo fraction, egg extract lot 2)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23822:
Nucleosome isolated from the metaphase chromosome (oligo fraction, egg extract lot 2, simultaneous structures reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23823:
Closed linker DNA nucleosome reconstituted with GUB DNA
Method: single particle / : Arimura Y, Funabiki H

EMDB-23824:
Open linker DNA nucleosome reconstituted with GUB DNA
Method: single particle / : Arimura Y, Funabiki H

EMDB-23826:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (crosslinked after MNase, egg extract lot 2)
Method: single particle / : Arimura Y, Funabiki H

PDB-7kbd:
Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

PDB-7kbe:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

PDB-7kbf:
H1.8 bound nucleosome isolated from metaphase chromosome in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-30267:
Human cGAS-nucleosome complex
Method: single particle / : Kujirai T, Zierhut C

PDB-7c0m:
Human cGAS-nucleosome complex
Method: single particle / : Kujirai T, Zierhut C, Takizawa Y, Kim R, Negishi L, Uruma N, Hirai S, Funabiki H, Kurumizaka H

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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