[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 584 items for (author: frank & ga)

EMDB-72469:
Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72470:
Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72475:
Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72482:
Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72483:
Structure of guinea pig ribosome with P/E-tRNA and mRNA
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-74615:
Structure of naked mole-rat ribosome (non-rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y42:
Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y44:
Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y49:
Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y4g:
Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y4h:
Structure of guinea pig ribosome with P/E-tRNA and mRNA
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9zrg:
Structure of naked mole-rat ribosome (non-rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-53931:
Memory engram synapse 3D molecular architecture visualized by cryoCLEM-guided cryoET
Method: electron tomography / : Frank RAW, Lovatt CA

EMDB-52187:
Amyloid DNA Bridging by Hfq C-terminal region
Method: helical / : Gragera M, Arluison V

EMDB-51772:
Cryo-EM structure of Heterooligomeric Bacterioferritin
Method: single particle / : Stein D, Zalk R, Shahar A, Zarivach R, Frank GA

EMDB-43349:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

PDB-8vlz:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

PDB-8vm4:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

EMDB-52215:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

EMDB-52216:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

PDB-9hji:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

PDB-9hjj:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

EMDB-47490:
Cryo-EM structure of the human P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47491:
Cryo-EM structure of the human P2X7 receptor in the ATP-bound open state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47492:
Cryo-EM structure of the human P2X7 receptor in the UB-ALT-P30-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47493:
Cryo-EM structure of the human P2X7 receptor in the UB-MBX-46-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47494:
Cryo-EM structure of the mouse P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3m:
Cryo-EM structure of the human P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3n:
Cryo-EM structure of the human P2X7 receptor in the ATP-bound open state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3o:
Cryo-EM structure of the human P2X7 receptor in the UB-ALT-P30-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3p:
Cryo-EM structure of the human P2X7 receptor in the UB-MBX-46-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3q:
Cryo-EM structure of the mouse P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-70812:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

EMDB-70813:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

PDB-9osw:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

PDB-9osy:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-48672:
Consensus map of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-48669:
Focused map of Pfs230 domains 1-8 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-48670:
Focused map of Pfs230 (domains 9-14) and Pfs48/45 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-48673:
Composite map of the endogenous complex of Pfs230-Pfs48/45
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

PDB-9mvt:
Pfs230 domains 1-8 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

PDB-9mvv:
Pfs230 (D9-D14) with Pfs48/45 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-49573:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

PDB-9nnf:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more