[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 381 items for (author: fisch & d)

EMDB-18697:
Subtomogram average of Ebola virus nucleocapsid obtained from cryo-FIB milled Ebola virus infected Huh7 cells at 22 hours post infection
Method: subtomogram averaging / : Vallbracht M, Chlanda P

EMDB-50647:
Stalled 90S - Utp23-Krr1-deltaC3 - Consensus refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50648:
Stalled 90S - Utp23-Krr1-deltaC3 - Head-Kre33 module - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50649:
Stalled 90S - Utp23-Krr1-deltaC3 - Krr1 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50650:
Stalled 90S - Utp23-Krr1-deltaC3 - Nop14 module - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50651:
Stalled 90S - Utp23-Krr1-deltaC3 - Utp10 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50652:
Stalled 90S - Utp23-Krr1-deltaC3 - Utp12 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50653:
Stalled 90S - Utp23-Krr1-deltaC3 - Utp20 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50654:
Stalled 90S - Utp23-Krr1-deltaC3 - UTP-A - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50958:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - 3' HACA - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50959:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - 5' HACA - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50960:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - Platform module - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50961:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - Consensus refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50964:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50967:
snR30 snoRNP - Class 1 - Utp23-Krr1-wt
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50968:
snR30 snoRNP - State 2 - Utp23-Krr1-deltaC3
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50969:
snR30 snoRNP - Class 2 - Utp23-Krr1-wt
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50991:
Stalled 90S - Utp23-Krr1-deltaC3
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

PDB-9g25:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

PDB-9g28:
snR30 snoRNP - State 2 - Utp23-Krr1-deltaC3
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

PDB-9g33:
Stalled 90S - Utp23-Krr1-deltaC3
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-47035:
Cryo-EM map of full-length Tom1 (S. cerevisiae), HECT focus map
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47045:
Cryo-EM map of full-length Tom1 (S. cerevisiae), ARLD1-4 focus map
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47046:
Focus map, Cryo-EM map of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-47047:
Cryo-EM map of non-crosslinked Tom1, open conformation
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47048:
Cryo-EM map of full length S. cerevisiae Tom1, closed-ring conformation
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47049:
Tom1 ubiquitylation cascade, closed-ring conformation
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47050:
Cryo-EM of Tom1 ubiquitylation, open conformation
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47051:
Cryo-EM of Tom1 ubiquitylation, class 3
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47052:
Cryo-EM map of Tom1 ubiquitylation, class 5
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47053:
Cryo-EM map of Tom1 ubiquitylation, class 4
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47054:
Cryo-EM map of Tom1 ubiquitylation, class 6
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47055:
Cryo EM map of Tom1 ubiquitylation, class 2
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47056:
Tom1 ubiquitylation, class 1
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47057:
Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-47058:
Cryo-EM structure of Tom1 (S. cerevisiae)
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

PDB-9dns:
Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

PDB-9dnt:
Cryo-EM structure of Tom1 (S. cerevisiae)
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-50336:
Cryo-EM structure of the ternary DARPin NY_1/HLA-A0201/NY-ESO1 complex.
Method: single particle / : Schulte T, Wallden K, Carroni M, Sandalova T, Walser M, Mueller S, Venetz N, Achour A

EMDB-62841:
Cryo-EM structure of the thermophile spliceosome (state ILS)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-62842:
Cryo-EM structure of the thermophile spliceosome (state B*Q1)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-62843:
Cryo-EM structure of the thermophile spliceosome (state B*Q2)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-62844:
Cryo-EM structure of the thermophile spliceosome (state B*Q2 focus DHX15)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

PDB-9l5r:
Cryo-EM structure of the thermophile spliceosome (state ILS)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

PDB-9l5s:
Cryo-EM structure of the thermophile spliceosome (state B*Q1)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

PDB-9l5t:
Cryo-EM structure of the thermophile spliceosome (state B*Q2)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-19941:
Structure of a B-state intermediate committed to discard (Bd-I state)
Method: single particle / : Soni K, Wild K, Sinning I

EMDB-19942:
Structure of a B-state intermediate committed to discard (Bd-II state)
Method: single particle / : Soni K, Wild K, Sinning I

PDB-9esh:
Structure of a B-state intermediate committed to discard (Bd-I state)
Method: single particle / : Soni K, Wild K, Sinning I

PDB-9esi:
Structure of a B-state intermediate committed to discard (Bd-II state)
Method: single particle / : Soni K, Wild K, Sinning I

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more