3DEM data search - EMN search

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Database	EMDB & PDB EMDB PDB / having EMPIAR entry Q: What are the data sources of EM Navigator?
Data entries	All Latest only Updated only / weeks ago Q: When the data are updated?
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Processing method	electron tomography subtomogram averaging single particle reconstruction helical reconstruction electron crystallography

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Entry	Title Data Release Date Last Update Submission Date Authors Processing Site EMPIAR-ID
Article	Journal Name PubMed ID Country
Sample	Component Species Aggregation State Molecular Weight (MDa)
Experiment	Cryogen Name Instrument for Vitrification Specimen Holder Specimen Temperature Microscope Accelerating Voltage Electron Source Detector
Processing	Method Resolution Resolution Method CTF correction 3D reconstruction Algorithm Software fo 3D reconstruction Model PDB ID Software for modeling

Max number of data	0 for all data
File format	CSV format (Comma-Separated Values, for Excel, etc.) TSV format (Tab Separated Values, for Excel, etc.) JSON format

Showing all 48 items for (author: edgar & jr)

EMDB-25574:
SARS-CoV-2 S-RBD + Fab 54042-4

EMDB-14359:
Tomogram showing SARS-CoV-2 virions that have a budding like profile within a viral containing compartment

EMDB-14361:
Tomogram showing SARS-CoV-2 virions that have a budding like profile within a viral containing compartment

EMDB-14363:
Tomogram showing SARS-CoV-2 virions that have a budding like profile within a viral containing compartment

EMDB-14364:
Tomogram showing SARS-CoV-2 S glycoprotein on the membrane of a viral containing compartment

EMDB-14365:
Tomogram showing SARS-CoV-2 S glycoprotein on the membrane of a viral containing compartment

EMDB-14366:
Tomogram of a SARS-CoV-2 virion fused to the plasma membrane of a ciliated airway cell

EMDB-14367:
Tomogram showing SARS-CoV-2 virions within a viral containing compartment of an infected airway cell

EMDB-22839:
BDBV-289 bound to EBOV GPdMuc Makona

EMDB-22841:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43 and ADI-15878

EMDB-22842:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293

EMDB-22847:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515

EMDB-22848:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442 and EBOV-515

EMDB-22851:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329 and EBOV-515

EMDB-22852:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-237 and EBOV-515

EMDB-22853:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-437 and EBOV-515

EMDB-20293:
EBOV GPdTM (Mayinga) in complex with rEBOV-548 Fab

EMDB-20301:
EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs

EMDB-20947:
EBOV GPdMuc Makona bound to rEBOV-548 Fab

EMDB-7955:
Negative stain EM map of Pan-EBOV antibody 520 Fab in complex with EBOV GPdMuc trimer

EMDB-7956:
Negative stain EM map of Pan-EBOV antibody 515 Fab in complex with EBOV GPdMuc trimer

EMDB-9131:
Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195

EMDB-7908:
VIC170 Fab in complex with Ebola virus GP

EMDB-7909:
VIC169 Fab in complex with Ebola virus GP

EMDB-7910:
VIC167 Fab in complex with Ebola virus GP

EMDB-7911:
VIC166 Fab in complex with Ebola virus GP

EMDB-7912:
VIC165 Fab in complex with Ebola virus GP

EMDB-7914:
VIC1164 Fab in complex with Ebola virus GP

EMDB-7915:
VIC163 Fab in complex with Ebola virus GP

EMDB-7926:
VIC82 Fab in complex with Ebola virus GP

EMDB-7927:
VIC43 Fab in complex with Ebola virus GP

EMDB-7928:
VIC32 Fab in complex with Ebola virus GP

EMDB-7929:
VIC26 Fab in complex with Ebola virus GP

EMDB-7930:
VIC16 Fab in complex with Ebola virus GP

EMDB-7931:
VIC15 Fab in complex with Ebola virus GP

EMDB-7932:
VIC12 Fab in complex with Ebola virus GP

EMDB-7933:
VIC11 Fab in complex with Ebola virus GP

EMDB-7922:
VIC133 Fab in complex with Ebola virus GP

EMDB-7923:
VIC101 Fab in complex with Ebola virus GP

EMDB-7924:
VIC94 Fab in complex with Ebola virus GP

EMDB-7925:
VIC91 Fab in complex with Ebola virus GP

EMDB-7934:
VIC130 Fab in complex with Ebola virus GP

EMDB-7916:
VIC161 Fab in complex with Ebola virus GP

EMDB-7917:
VIC160 Fab in complex with Ebola virus GP

EMDB-7918:
VIC158 Fab in complex with Ebola virus GP

EMDB-7919:
VIC157 Fab in complex with Ebola virus GP

EMDB-7920:
VIC142 Fab in complex with Ebola virus GP

EMDB-7921:
VIC139 Fab in complex with Ebola virus GP

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News

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

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Mar 5, 2020. Novel coronavirus structure data

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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Related info.:EMN Search / EMN Statistics

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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Feb 9, 2022. New format data for meta-information of EMDB entries

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

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Aug 12, 2020. Covid-19 info

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Mar 5, 2020. Novel coronavirus structure data

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Jul 5, 2019. Downlodablable text data

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EMN Search