[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 71 items for (author: donovan & ka)

EMDB-54194:
ZZ1-SO2H-induced assembly of the YPEL5-CTLH E3 ligase and BRD4(BD1) neosubstrate
Method: single particle / : Chrustowicz J, Schulman BA

EMDB-54215:
Ternary complex of an improved charged molecular glue degrader ZZ2-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

EMDB-54216:
Ternary complex of a charged molecular glue degrader ZZ1-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

PDB-9rsc:
Ternary complex of an improved charged molecular glue degrader ZZ2-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

PDB-9rsd:
Ternary complex of a charged molecular glue degrader ZZ1-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-47174:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

PDB-9dur:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

EMDB-71617:
Cryo-EM map of BRD9-ZZ7-DCAF16/DDB1/DDA1 ternary complex
Method: single particle / : Jin C, Baek K, Fischer E

EMDB-72209:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-72215:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449; G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-46426:
Myosin force-evoked superhelical F-actin
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46427:
Control myosin-tethered F-actin -ATP 1
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46428:
Control myosin-tethered F-actin -ATP 2
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46429:
Consensus force-activated alpha-catenin-F-actin complex
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46431:
3DVA sorted force-activated alpha-catenin-F-actin complex
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-47268:
Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-47269:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-47270:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216 local refinement
Method: single particle / : Baek K, Fischer ES

PDB-9dwv:
Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Method: single particle / : Baek K, Fischer ES

PDB-9dww:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-47035:
Cryo-EM map of full-length Tom1 (S. cerevisiae), HECT focus map
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47045:
Cryo-EM map of full-length Tom1 (S. cerevisiae), ARLD1-4 focus map
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47046:
Focus map, Cryo-EM map of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-47047:
Cryo-EM map of non-crosslinked Tom1, open conformation
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47048:
Cryo-EM map of full length S. cerevisiae Tom1, closed-ring conformation
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47049:
Tom1 ubiquitylation cascade, closed-ring conformation
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47050:
Cryo-EM of Tom1 ubiquitylation, open conformation
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47051:
Cryo-EM of Tom1 ubiquitylation, class 3
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47052:
Cryo-EM map of Tom1 ubiquitylation, class 5
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47053:
Cryo-EM map of Tom1 ubiquitylation, class 4
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47054:
Cryo-EM map of Tom1 ubiquitylation, class 6
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47055:
Cryo EM map of Tom1 ubiquitylation, class 2
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47056:
Tom1 ubiquitylation, class 1
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47057:
Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-47058:
Cryo-EM structure of Tom1 (S. cerevisiae)
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

PDB-9dns:
Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

PDB-9dnt:
Cryo-EM structure of Tom1 (S. cerevisiae)
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-46922:
WEE1 bound to CRBN-DDB1 via compound 10 (CRBN closed conformation)
Method: single particle / : Baek K, Fischer ES

EMDB-46923:
WEE1 bound to CRBN-DDB1 via compound 10 (CRBN open conformation)
Method: single particle / : Baek K, Fischer ES

EMDB-44389:
Cryo-EM structure of the ZBTB5 BTB domain filament
Method: single particle / : Park J, Hunkeler M, Fischer ES

EMDB-44391:
Cryo-EM structure of the ZBTB9 BTB domain filament
Method: helical / : Park J, Hunkeler M, Fischer ES

PDB-9b9r:
Cryo-EM structure of the ZBTB5 BTB domain filament
Method: single particle / : Park J, Hunkeler M, Fischer ES

PDB-9b9v:
Cryo-EM structure of the ZBTB9 BTB domain filament
Method: helical / : Park J, Hunkeler M, Fischer ES

EMDB-41363:
Cryo-EM structure of DDB1deltaB-DDA1-DCAF5
Method: single particle / : Yue H, Hunkeler M, Roy Burman SS, Fischer ES

PDB-8tl6:
Cryo-EM structure of DDB1deltaB-DDA1-DCAF5
Method: single particle / : Yue H, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-41423:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more