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- EMDB-46429: Consensus force-activated alpha-catenin-F-actin complex -

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Basic information

Entry
Database: EMDB / ID: EMD-46429
TitleConsensus force-activated alpha-catenin-F-actin complex
Map dataMain map for consensus alpha-catenin bound F-actin under myosin forces
Sample
  • Complex: Consensus alpha-catenin bound F-actin under myosin-directed force conditions
    • Protein or peptide: Actin, alpha skeletal muscle
    • Protein or peptide: Catenin Alpha 1
KeywordsCytoskeleton / actin / STRUCTURAL PROTEIN
Biological speciesGallus gallus (chicken) / Homo sapiens (human)
Methodsingle particle reconstruction / cryo EM / Resolution: 10.4 Å
AuthorsReynolds MJ / Carl AG / Alushin GM
Funding support United States, 1 items
OrganizationGrant numberCountry
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R01GM141044 United States
CitationJournal: Nature / Year: 2026
Title: Myosin forces remodel F-actin for mechanosensitive protein recognition.
Authors: Ayala G Carl / Matthew J Reynolds / Xiaoyu Sun / Pinar S Gurel / Donovan Y Z Phua / Keith Hamilton / Lin Mei / John W Watters / Yasuharu Takagi / Alex J Noble / James R Sellers / Gregory M Alushin /
Abstract: Cells interface mechanically with their surroundings through cytoskeleton-linked adhesions, which enable them to sense physical cues that instruct development and drive diseases such as cancer. ...Cells interface mechanically with their surroundings through cytoskeleton-linked adhesions, which enable them to sense physical cues that instruct development and drive diseases such as cancer. Contractile forces generated by myosin motor proteins mediate these mechanical signal transduction processes through unknown protein structural mechanisms. Here we show that force generated by myosin elicits structural changes in actin filaments (F-actin) that modulate binding by the mechanosensitive adhesion protein α-catenin. Using correlative cryo-fluorescence microscopy and cryo-electron tomography, we identify F-actin featuring sinusoidal regions of nanoscale oscillating curvature at cytoskeleton-adhesion interfaces enriched in zyxin, a marker of actin-myosin-generated traction forces. We introduce a reconstitution system for visualizing F-actin in the presence of myosin forces using cryo-electron microscopy, which reveals morphologically similar F-actin supercoils. In simulations, compressive forces that mimic myosin activity produce supercoils, which can be generated by ensembles of asynchronous motors regardless of their directionality. Three-dimensional reconstruction of supercoils uncovers extensive asymmetric remodelling of the helical lattice of F-actin. This is recognized by α-catenin, which binds cooperatively along individual strands, preferentially engaging interfaces that feature extended inter-subunit distances while simultaneously suppressing rotational deviations to regularize the lattice. In sum, we find that myosin forces can deform F-actin, generating a conformational landscape that is detected and reciprocally modulated by a mechanosensitive protein, providing a direct structural glimpse at active force transduction through the cytoskeleton.
History
DepositionAug 5, 2024-
Header (metadata) releaseAug 13, 2025-
Map releaseAug 13, 2025-
UpdateMay 13, 2026-
Current statusMay 13, 2026Processing site: RCSB / Status: Released

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Structure visualization

Supplemental images

emd_46429.png

Downloads & links

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Map

FileDownload / File: emd_46429.map.gz / Format: CCP4 / Size: 216 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationMain map for consensus alpha-catenin bound F-actin under myosin forces
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
2.66 Å/pix.
x 384 pix.
= 1021.44 Å		2.66 Å/pix.
x 384 pix.
= 1021.44 Å		2.66 Å/pix.
x 384 pix.
= 1021.44 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 2.66 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 1.0
Minimum - Maximum-0.9164305 - 2.928741
Average (Standard dev.)0.0006277209 (±0.10026119)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions384384384
Spacing384384384
CellA=B=C: 1021.44006 Å
α=β=γ: 90.0 °

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Supplemental data

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Mask #1

Fileemd_46429_msk_1.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: Half map 1 for consensus alpha-catenin bound F-actin...

Fileemd_46429_half_map_1.map
AnnotationHalf map 1 for consensus alpha-catenin bound F-actin under myosin forces
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: Half map 2 for consensus alpha-catenin bound F-actin...

Fileemd_46429_half_map_2.map
AnnotationHalf map 2 for consensus alpha-catenin bound F-actin under myosin forces
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Sample components

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Entire : Consensus alpha-catenin bound F-actin under myosin-directed force...

EntireName: Consensus alpha-catenin bound F-actin under myosin-directed force conditions
Components
  • Complex: Consensus alpha-catenin bound F-actin under myosin-directed force conditions
    • Protein or peptide: Actin, alpha skeletal muscle
    • Protein or peptide: Catenin Alpha 1

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Supramolecule #1: Consensus alpha-catenin bound F-actin under myosin-directed force...

SupramoleculeName: Consensus alpha-catenin bound F-actin under myosin-directed force conditions
type: complex / ID: 1 / Parent: 0 / Macromolecule list: all

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Macromolecule #1: Actin, alpha skeletal muscle

MacromoleculeName: Actin, alpha skeletal muscle / type: protein_or_peptide / ID: 1 / Enantiomer: LEVO
Source (natural)Organism: Gallus gallus (chicken)
SequenceString: MCDEDETTAL VCDNGSGLVK AGFAGDDAPR AVFPSIVGRP RHQGVMVGMG QKDSYVGDEA QSKRGILTLK YPIE(HIC)G IIT NWDDMEKIWH HTFYNELRVA PEEHPTLLTE APLNPKANRE KMTQIMFETF NVPAMYVAIQ AVLSLYASGR TTGIVLD SG DGVTHNVPIY ...String:
MCDEDETTAL VCDNGSGLVK AGFAGDDAPR AVFPSIVGRP RHQGVMVGMG QKDSYVGDEA QSKRGILTLK YPIE(HIC)G IIT NWDDMEKIWH HTFYNELRVA PEEHPTLLTE APLNPKANRE KMTQIMFETF NVPAMYVAIQ AVLSLYASGR TTGIVLD SG DGVTHNVPIY EGYALPHAIM RLDLAGRDLT DYLMKILTER GYSFVTTAER EIVRDIKEKL CYVALDFENE MATAASSS S LEKSYELPDG QVITIGNERF RCPETLFQPS FIGMESAGIH ETTYNSIMKC DIDIRKDLYA NNVMSGGTTM YPGIADRMQ KEITALAPST MKIKIIAPPE RKYSVWIGGS ILASLSTFQQ MWITKQEYDE AGPSIVHRKC F

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Macromolecule #2: Catenin Alpha 1

MacromoleculeName: Catenin Alpha 1 / type: protein_or_peptide / ID: 2 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString: MTAVHAGNIN FKWDPKSLE I RTLAVERL LE PLVTQVT TLV NTNSKG PSNK KRGRS KKAHV LAAS VEQATE NFL EKGDKIA KE SQFLKEEL V AAVEDVRKQ GDLMKAAAGE FADDPCSSV K RGNMVRAA RA LLSAVTR LLI LADMAD VYKL LVQLK ...String:
MTAVHAGNIN FKWDPKSLE I RTLAVERL LE PLVTQVT TLV NTNSKG PSNK KRGRS KKAHV LAAS VEQATE NFL EKGDKIA KE SQFLKEEL V AAVEDVRKQ GDLMKAAAGE FADDPCSSV K RGNMVRAA RA LLSAVTR LLI LADMAD VYKL LVQLK VVEDG ILKL RNAGNE QDL GIQYKAL KP EVDKLNIM A AKRQQELKD VGHRDQMAAA RGILQKNVP I LYTASQAC LQ HPDVAAY KAN RDLIYK QLQQ AVTGI SNAAQ ATAS DDASQH QGG GGGELAY AL NNFDKQII V DPLSFSEER FRPSLEERLE SIISGAALM A DSSCTRDD RR ERIVAEC NAV RQALQD LLSE YMGNA GRKER SDAL NSAIDK MTK KTRDLRR QL RKAVMDHV S DSFLETNVP LLVLIEAAKN GNEKEVKEY A QVFREHAN KL IEVANLA CSI SNNEEG VKLV RMSAS QLEAL CPQV INAALA LAA KPQSKLA QE NMDLFKEQ W EKQVRVLTD AVDDITSIDD FLAVSENHI L EDVNKCVI AL QEKDVDG LDR TAGAIR GRAA RVIHV VTSEM DNYE PGVYTE KVL EATKLLS NT VMPRFTEQ V EAAVEALSS DPAQPMDENE FIDASRLVY D GIRDIRKA VL MIRTPEE LDD SDFETE DFDV RSRTS VQTED DQLI AGQSAR AIM AQLPQEQ KA KIAEQVAS F QEEKSKLDA EVSKWDDSGN DIIVLAKQM C MIMMEMTD FT RGKGPLK NTS DVISAA KKIA EAGSR MDKLG RTIA DHCPDS ACK QDLLAYL QR IALYCHQL N ICSKVKAEV QNLGGELVVS GVDSAMSLI Q AAKNLMNA VV QTVKASY VAS TKYQKS QGMA SLNLP AVSWK MKAP EKKPLV KRE KQDETQT KI KRASQKKH V NPVQALSEF KAMDSI

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation statefilament

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Sample preparation

BufferpH: 7.5
VitrificationCryogen name: ETHANE

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Electron microscopy

MicroscopeFEI TITAN KRIOS
Image recordingFilm or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: SUPER-RESOLUTION / Average electron dose: 56.33 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 3.5 µm / Nominal defocus min: 1.5 µm / Nominal magnification: 22500
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

CTF correctionType: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: NONE
Details: Ab initio reconstruction as implemented in cryoSPARC
Final reconstructionApplied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 10.4 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 3289
Initial angle assignmentType: RANDOM ASSIGNMENT
Final angle assignmentType: MAXIMUM LIKELIHOOD
FSC plot (resolution estimation)

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