[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 332 items for (author: diamond & mi)

EMDB-75697:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation bound to C77G12 (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70084:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70086:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3v:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3w:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3y:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-45969:
Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45971:
Local refinement of the SARS-CoV-2 BA.2.86 NTD
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45972:
SARS-CoV-2 BA.2.86 Spike trimer in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwp:
Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwq:
Local refinement of the SARS-CoV-2 BA.2.86 NTD
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwr:
SARS-CoV-2 BA.2.86 Spike trimer in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-49361:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*02
Method: single particle / : Maso L

EMDB-49362:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*03
Method: single particle / : Maso L

PDB-9nfb:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*02
Method: single particle / : Maso L

PDB-9nfc:
Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*03
Method: single particle / : Maso L

EMDB-47426:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

PDB-9e21:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

EMDB-49104:
WEEV McMillan VLP in complex with VLDLR-LBD-Fc ASU
Method: single particle / : Raju S, Diamond MS, Fremont DH

EMDB-49105:
WEEV McMillan VLP Apo
Method: single particle / : Raju S, Diamond MS, Fremont DH

EMDB-49106:
SINV-WEEV Fleming in complex with VLDLR-LBD-Fc ASU
Method: single particle / : Raju S, Diamond MS, Fremont DH

EMDB-47775:
WEEV CBA87 VLP in complex with human PCDH10-EC1
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-47821:
WEEV McMillan VLP in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-47822:
SINV-WEEV Fleming in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-47846:
RRV DKTA VLP in complex with VLDLR-LBD-Fc
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9e96:
WEEV CBA87 VLP in complex with human PCDH10-EC1
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9e9y:
WEEV McMillan VLP in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9e9z:
SINV-WEEV Fleming in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9eau:
RRV DKTA VLP in complex with VLDLR-LBD-Fc
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-48323:
Structure of the IFIT2-IFIT3 heterodimer from Mus musculus
Method: single particle / : Glasner DR, Todd C, Cook BD, DUrso A, Khosla S, Estrada E, Wagner J, Bartels MD, Ford P, Prych J, Hatch K, Yee BA, Ego KM, Liang Q, Holland SR, Case JB, Corbett KD, Diamond MS, Yeo GW, Herzik Jr MA, Van Nostrand EL, Daugherty MD

PDB-9mk9:
Structure of the IFIT2-IFIT3 heterodimer from Mus musculus
Method: single particle / : Glasner DR, Todd C, Cook BD, DUrso A, Khosla S, Estrada E, Wagner J, Bartels MD, Ford P, Prych J, Hatch K, Yee BA, Ego KM, Liang Q, Holland SR, Case JB, Corbett KD, Diamond MS, Yeo GW, Herzik Jr MA, Van Nostrand EL, Daugherty MD

EMDB-46908:
Recombinant AD-fold Paired Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46915:
Recombinant AD-fold Quadruple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-43882:
Negative stain EM map of SARS-COV-2 (XBB) spike protein in complex with Fab COV2-3872
Method: single particle / : Binshtein E, Crowe JE

EMDB-43883:
Negative stain EM map of SARS-COV-2 (XBB) spike protein in complex with Fab COV2-3889
Method: single particle / : Binshtein E, Crowe JE

EMDB-43884:
Negative stain EM map of SARS-COV-2 (BQ 1.1) spike protein in complex with Fab COV2-3891
Method: single particle / : Binshtein E, Crowe JE

EMDB-43885:
Negative stain EM map of SARS-COV-2 (XBB) spike protein in complex with Fab COV2-3892
Method: single particle / : Binshtein E, Crowe JE

EMDB-43886:
Negative stain EM map of SARS-COV-2 (XBB) spike protein in complex with Fab COV2-3906
Method: single particle / : Binshtein E, Crowe JE

EMDB-43887:
Negative stain EM map of SARS-COV-2 (XBB) spike protein in complex with Fab COV2-3967
Method: single particle / : Binshtein E, Crowe JE

EMDB-43888:
Negative stain EM map of SARS-COV-2 (XBB) spike protein in complex with Fab COV2-4094
Method: single particle / : Binshtein E, Crowe JE

EMDB-46870:
Recombinant AD PHF
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46885:
AD-fold Tri Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Kunach P, Diamond MI

EMDB-46909:
Recombinant AD-fold Paired Helical Filament II Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46911:
Recombinant AD-fold Triple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46904:
AD-fold Quadruple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Kunach P, Diamond MI

EMDB-47092:
Recombinant Truncated Tau 266-391 fibrillized in NaCl Second Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46937:
Recombinant Truncated Tau 266-391 fibrillized in NaCl
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-42463:
Alzheimer's disease PHF complexed with PET ligand MK-6240
Method: helical / : Kunach P, Shahmoradian SH, Diamond MI, Rosa-Neto P

PDB-8uq7:
Alzheimer's disease PHF complexed with PET ligand MK-6240
Method: helical / : Kunach P, Shahmoradian SH, Diamond MI, Rosa-Neto P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more