[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 145 items for (author: collins & r)

EMDB-52262:
Sub-tomogram average of the wild-type C. elegans respirasome
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52263:
Sub-tomogram average of the wild-type C. elegans I1III2 respiratory supercomplex
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52264:
Sub-tomogram average of wild-type C. elegans complex I
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52265:
Sub-tomogram average of nduf-11(RNAi) C. elegans respiratory complex I
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52266:
Sub-tomogram average of the wild-type C. elegans ATP synthase dimer (narrow membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52267:
Sub-tomogram average of the wild-type C. elegans ATP synthase dimer (intermediate membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52268:
Sub-tomogram average of the wild-type C. elegans ATP synthase dimer (wide membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52269:
Sub-tomogram average of the nduf-11(RNAi) C. elegans ATP synthase dimer (narrow membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52271:
Sub-tomogram average of the nduf-11(RNAi) C. elegans ATP synthase dimer (intermediate membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52272:
Sub-tomogram average of the nduf-11(RNAi) C. elegans ATP synthase dimer (wide membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-70077:
Plasmodium falciparum 20S proteasome bound to inhibitor 159
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

EMDB-70078:
Plasmodium falciparum 20S proteasome bound to inhibitor 296
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

PDB-9o3e:
Plasmodium falciparum 20S proteasome bound to inhibitor 159
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

PDB-9o3f:
Plasmodium falciparum 20S proteasome bound to inhibitor 296
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

EMDB-72266:
Cryo-EM structure of octameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Method: single particle / : Collins BM, Healy MD, Liu M, Cater RJ

EMDB-72267:
CryoEM structure of decameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Method: single particle / : Collins BM, Healy MD, Liu M, Cater RJ

PDB-9q6c:
Cryo-EM structure of octameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Method: single particle / : Collins BM, Healy MD, Liu M, Cater RJ

PDB-9q6d:
CryoEM structure of decameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Method: single particle / : Collins BM, Healy MD, Liu M, Cater RJ

EMDB-47928:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 (focused refinement of NTD and WRAIR-2008)
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

EMDB-48284:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with neutralizing human antibody WRAIR-2008
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

PDB-9ecz:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 (focused refinement of NTD and WRAIR-2008)
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

PDB-9mi3:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with neutralizing human antibody WRAIR-2008
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

EMDB-70961:
Cryo-EM structure of S. Mansoni p97 bound to CB-5083
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71062:
Cryo-EM structure of apo S. Mansoni p97
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71063:
Cryo-EM structure of S. Mansoni p97 bound to ATPgS
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71064:
Cryo-EM structure of S. Mansoni p97 bound to compound 739
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

EMDB-71066:
Cryo-EM structure of S. Mansoni p97 bound to compound 804
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

PDB-9ox9:
Cryo-EM structure of S. Mansoni p97 bound to CB-5083
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

PDB-9p00:
Cryo-EM structure of apo S. Mansoni p97
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

PDB-9p01:
Cryo-EM structure of S. Mansoni p97 bound to ATPgS
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

PDB-9p02:
Cryo-EM structure of S. Mansoni p97 bound to compound 739
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

PDB-9p07:
Cryo-EM structure of S. Mansoni p97 bound to compound 804
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

EMDB-49515:
Structure of R2 retrotransposon protein from Platysternon megacephalum initiating target-primed reverse transcription
Method: single particle / : Thawani A, Collins K, Nogales E

EMDB-49516:
Structure of R2 retrotransposon protein from Taeniopygia guttata initiating target-primed reverse transcription
Method: single particle / : Thawani A, Collins K, Nogales E

EMDB-49517:
Structure of R2 retrotransposon protein from Platysternon megacephalum after second strand nicking
Method: single particle / : Thawani A, Collins K, Nogales E

PDB-9nl2:
Structure of R2 retrotransposon protein from Platysternon megacephalum initiating target-primed reverse transcription
Method: single particle / : Thawani A, Collins K, Nogales E

PDB-9nl3:
Structure of R2 retrotransposon protein from Taeniopygia guttata initiating target-primed reverse transcription
Method: single particle / : Thawani A, Collins K, Nogales E

PDB-9nl4:
Structure of R2 retrotransposon protein from Platysternon megacephalum after second strand nicking
Method: single particle / : Thawani A, Collins K, Nogales E

EMDB-48575:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48591:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msd:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msy:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-19717:
Cryo-EM structure of the C terminal region of PTX3 with a section of coiled-coil
Method: single particle / : Snee M, Shah A, Lockhart-Cairns M, Collins R, Levy C, Baldock C, Day A

PDB-8s50:
Cryo-EM structure of the C terminal region of PTX3 with a section of coiled-coil
Method: single particle / : Snee M, Shah A, Lockhart-Cairns M, Collins R, Levy C, Baldock C, Day A

EMDB-18991:
Sub-tomogram average of the C. elegans ATP synthase dimer
Method: subtomogram averaging / : Buzzard EJ, McLaren M, Gold VAM

EMDB-42637:
Human LINE-1 retrotransposon ORF2 protein engaged with template RNA in elongation state
Method: single particle / : Thawani A, Florez Ariza AJ, Collins K, Nogales E

PDB-8uw3:
Human LINE-1 retrotransposon ORF2 protein engaged with template RNA in elongation state
Method: single particle / : Thawani A, Florez Ariza AJ, Collins K, Nogales E

EMDB-28825:
Human CCC complex
Method: single particle / : Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Kadapalakere SY, Ross J, Borucu U, Palmer CS, Chen K, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Berger-Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ

EMDB-28827:
Human CCC complex
Method: single particle / : Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Kadapalakere SY, Ross J, Borucu U, Palmer CS, Chen K, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Berger-Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ

PDB-8f2r:
Human CCC complex
Method: single particle / : Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Kadapalakere SY, Ross J, Borucu U, Palmer CS, Chen K, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Berger-Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more