[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 305 items for (author: chen & ys)

EMDB-45035:
Consensus map of mink RyR3 in closed conformation
Method: single particle / : Chen YS, Van Petegem F

EMDB-45107:
Local refinement map of mink RyR3 in closed conformation using mask 1 (FKBP12.6/NTD/Nsol/SPRY/Repeat1&2)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45108:
Local refinement map of mink RyR3 in closed conformation using mask 2 (Jsol/Csol/Bsol)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45109:
Local refinement map of mink RyR3 in closed conformation using mask 3 (Bsol/Repeat3&4)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45110:
Local refinement map of mink RyR3 in closed conformation using mask 4 (TMD/CTD)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45111:
Consensus map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine
Method: single particle / : Chen YS, Van Petegem F

EMDB-45112:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 1 (FKBP12.6/NTD/Nsol/SPRY/Repeat1&2)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45113:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 2 (Jsol/Csol/Bsol)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45114:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 3 (Bsol/Repeat3&4)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45115:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 4 (TMD/CTD)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45116:
Composite map of mink RyR3 in closed conformation
Method: single particle / : Chen YS, Van Petegem F

EMDB-45117:
Composite map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine
Method: single particle / : Chen YS, Van Petegem F

EMDB-19190:
REEL analysis reconstructions of lumbricus terrestris erythrocruorin (worm hemoglobin)
Method: single particle / : Pfeil-Gardiner O, Murphy BJ

EMDB-19191:
REEL analysis reconstructions of Ryanodine Receptor 1
Method: single particle / : Pfeil-Gardiner O, Murphy BJ

EMDB-45127:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

EMDB-45156:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45792:
Constituent EM map: focused refinement of the Venus flytrap (VFT) and cysteine-rich (CRD) domains of the calcium-sensing receptor.
Method: single particle / : Wu C, Skiniotis G

EMDB-45795:
Focused refinement of the Heptahelical transmembrane (7TM) domain of the calcium-sensing receptor
Method: single particle / : Wu C, Skiniotis G

EMDB-45804:
Raw Consensus map of the Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

EMDB-45882:
Raw Consensus map of the Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45901:
Focused refinement of the Heptahelical transmembrane (7TM) domain of the calcium-sensing receptor bound to positive modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45902:
Focused refinement of the Venus flytrap domain of the calcium-sensing receptor bound to positive modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-41495:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: cis-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41496:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: trans-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tpw:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: cis-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tpx:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: trans-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41355:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its translocation ACP partner of Module 2
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tko:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its translocation ACP partner of Module 2
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-43746:
Plasmodium falciparum 20S proteasome bound to an inhibitor
Method: single particle / : Han Y, Deng X, Ray S, Chen Z, Phillips M

PDB-8w2f:
Plasmodium falciparum 20S proteasome bound to an inhibitor
Method: single particle / : Han Y, Deng X, Ray S, Chen Z, Phillips M

EMDB-41305:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41306:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked Intra-State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41307:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its elongation ACP partner
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjn:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjo:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked Intra-State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjp:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its elongation ACP partner
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-42497:
Spo11 core complex with gapped DNA
Method: single particle / : Yu Y, Patel DJ

EMDB-42501:
Spo11 core complex with hairpin DNA
Method: single particle / : Yu Y, Patel DJ

PDB-8urq:
Spo11 core complex with gapped DNA
Method: single particle / : Yu Y, Patel DJ

PDB-8uru:
Spo11 core complex with hairpin DNA
Method: single particle / : Yu Y, Patel DJ

EMDB-40207:
Complex of human cystic fibrosis transmembrane conductance regulator (CFTR) and Z1834339853
Method: single particle / : Liu F, Chen J

EMDB-35827:
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37652:
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37656:
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37657:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37762:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-41024:
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41025:
MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41026:
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41027:
MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more