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Showing 1 - 50 of 18,229 items for (author: chen & g)

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-75877:
Cryo-EM structure of human DNMT3A R882H octadecamer
Method: single particle / : Song J, Lu J, Chen J

PDB-11oa:
Cryo-EM structure of human DNMT3A R882H octadecamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75876:
Cryo-EM structure of human DNMT3A R882H decamer
Method: single particle / : Song J, Lu J, Chen J

PDB-11nz:
Cryo-EM structure of human DNMT3A R882H decamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75885:
Cryo-EM structure of human DNMT3A homo-tetramer
Method: single particle / : Song J, Lu J, Chen J

PDB-11oh:
Cryo-EM structure of human DNMT3A homo-tetramer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75875:
Cryo-EM consensus map of human DNMT3A homo-hexamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75886:
Cryo-EM structure of human DNMT3A homo-hexamer
Method: single particle / : Song J, Lu J, Chen J

PDB-11oi:
Cryo-EM structure of human DNMT3A homo-hexamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-63757:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

EMDB-65041:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

PDB-9mao:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

PDB-9vfx:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

EMDB-68387:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

PDB-22jw:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

EMDB-54637:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-54638:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-54639:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-54640:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-55836:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with peptidyl-tRNA (P)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-55837:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in classical pre-translocation state (AP)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-55838:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in late hybrid state (H2)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7b:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7c:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7d:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7e:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-54518:
Focused map of the 20S proteasome from Pyrococcus abyssi in complex with Q9UYJ3 (APA1)
Method: single particle / : Musso F, Marino Puertas L, Weis F, Schoehn G, Franzetti B

EMDB-55458:
In-cell structure of dark-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55459:
In-cell structure of dark-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in non-translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55461:
In-cell structure of light-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55462:
In-cell structure of light-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in non-translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55463:
In-cell structure of dark-treated wild-type C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55464:
In-cell structure of chlL-deleted C.reinhardtii chloroplast F-ATPase
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55465:
In-cell structure of chlL-deleted C.reinhardtii cytoplasmic 80S ribosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55466:
In-cell structure of chlL-deleted C.reinhardtii RuBisCo
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-68865:
Cryo-EM structure of RSC complex from Chaetomium thermophilum
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68925:
Cryo-EM structure of SWI/SNF complex from Chaetomium thermophilum
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68926:
The focused refined map for ATPase-ARP-NCP region from the Chaetomium thermophilum RSC-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68927:
The consensus map for the complete Chaetomium thermophilum RSC-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68928:
The focused refined map for the base module from the Chaetomium thermophilum RSC-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68935:
Cryo-EM structure of Chaetomium thermophilum RSC bound to a nucleosome
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68940:
The consensus map for the complete Chaetomium thermophilum SWI/SNF-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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