3DEM data search - EMN search

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Database	EMDB & PDB EMDB PDB / having EMPIAR entry Q: What are the data sources of EM Navigator?
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Processing method	electron tomography subtomogram averaging single particle reconstruction helical reconstruction electron crystallography

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Entry	Title Data Release Date Last Update Submission Date Authors Processing Site EMPIAR-ID
Article	Journal Name PubMed ID Country
Sample	Component Species Aggregation State Molecular Weight (MDa)
Experiment	Cryogen Name Instrument for Vitrification Specimen Holder Specimen Temperature Microscope Accelerating Voltage Electron Source Detector
Processing	Method Resolution Resolution Method CTF correction 3D reconstruction Algorithm Software fo 3D reconstruction Model PDB ID Software for modeling

Max number of data	0 for all data
File format	CSV format (Comma-Separated Values, for Excel, etc.) TSV format (Tab Separated Values, for Excel, etc.) JSON format

Showing all 27 items for (author: chazin & wj)

EMDB-41940:
Human RADX tetramer bound to ssDNA

EMDB-42990:
DNA initiation complex (configuration 1) of Xenopus laevis DNA polymerase alpha-primase

EMDB-42991:
DNA initiation complex (configuration 2) of Xenopus laevis DNA polymerase alpha-primase

EMDB-42992:
DNA elongation complex (configuration 1) of Xenopus laevis DNA polymerase alpha-primase

EMDB-42993:
DNA elongation complex (configuration 2) of Xenopus laevis DNA polymerase alpha-primase

EMDB-42034:
RNA priming complex of Human polymerase alpha-primase (Conformation 2)

EMDB-42036:
Human Polymerase alpha-Primase, polymerase alpha catalytic domain deletion mutant (Conformation 1)

EMDB-42037:
Human Polymerase alpha-Primase, polymerase alpha catalytic domain deletion mutant (Conformation 2)

EMDB-42033:
RNA priming complex of Human Polymerase-Alpha-Primase (Conformation 1)

EMDB-42035:
RNA priming complex of Human Polymerase alpha-primase (Conformation 3)

EMDB-42140:
Partial DNA termination subcomplex of Xenopus laevis DNA polymerase alpha-primase

EMDB-42141:
Complete DNA termination subcomplex 1 of Xenopus laevis DNA polymerase alpha-primase

EMDB-42142:
Complete DNA termination subcomplex 2 of Xenopus laevis DNA polymerase alpha-primase

EMDB-41939:
human RADX trimer bound to ssDNA

EMDB-42156:
RADX trimer locally refined map 1

EMDB-42157:
RADX trimer locally refined map 2

EMDB-42162:
RADX trimer consensus map

EMDB-29862:
Partial auto-inhibitory complex of Xenopus laevis DNA polymerase alpha-primase

EMDB-29864:
Complete auto-inhibitory complex of Xenopus laevis DNA polymerase alpha-primase

EMDB-29871:
DNA initiation subcomplex of Xenopus laevis DNA polymerase alpha-primase

EMDB-29872:
Partial DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase

EMDB-29873:
Complete DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase

EMDB-29888:
Tetramer core subcomplex (conformation 1) of Xenopus laevis DNA polymerase alpha-primase

EMDB-29889:
Tetramer core subcomplex (conformation 2) of Xenopus laevis DNA polymerase alpha-primase

EMDB-29891:
Tetramer core subcomplex (conformation 3) of Xenopus laevis DNA polymerase alpha-primase

EMDB-29886:
Partial DNA termination subcomplex of Xenopus laevis DNA polymerase alpha-primase

EMDB-25692:
The 6.1 angstrom cryoEM map of calprotectin bound to TdfH

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Mar 5, 2020. Novel coronavirus structure data

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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