3DEM data search - EMN search

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Processing method	electron tomography subtomogram averaging single particle reconstruction helical reconstruction electron crystallography

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Entry	Title Data Release Date Last Update Submission Date Authors Processing Site EMPIAR-ID
Article	Journal Name PubMed ID Country
Sample	Component Species Aggregation State Molecular Weight (MDa)
Experiment	Cryogen Name Instrument for Vitrification Specimen Holder Specimen Temperature Microscope Accelerating Voltage Electron Source Detector
Processing	Method Resolution Resolution Method CTF correction 3D reconstruction Algorithm Software fo 3D reconstruction Model PDB ID Software for modeling

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Showing all 19 items for (author: chang & yj)

EMDB-25618:
SARS-CoV-2 VFLIP spike boung to 2 Ab12 Fab fragments

EMDB-25663:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map

EMDB-25689:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, global map with poorly-resolved RBDs and scFvs

EMDB-25690:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, local refinement map

EMDB-25711:
SARS-CoV-2 S (Spike Glycoprotein) D614G with One(1) RBD Up

EMDB-32121:
TIR-dsDNA initial state complex

EMDB-32125:
L7-TIR nucleic acids complex intermediate complex

EMDB-32126:
L7-TIR-nucleic acid End State Complex

EMDB-31482:
Cryo-EM structure of the human TACAN channel in a closed state

EMDB-22877:
E. coli ribosome structure

EMDB-22878:
Subtomogram average structure of E. coli polysome

EMDB-21884:
Local refined structure of stator and C-ring interaction region in clockwise rotating delta-cheY3 Borrelia flagellar motor

EMDB-21885:
Local refined stator-rotor interaction region in delta-cheX Borrelia flagellar motor

EMDB-21886:
Local refined structure of stator and C-ring interaction region in counter-clockwise rotating delta-cheY3 Borrelia flagellar motor

EMDB-20611:
In situ structure of Shigella flexneri type III secretion system

EMDB-0534:
Asymmetric reconstruction of the in situ flagellar motor structure in Borrelia burgdorferi

EMDB-0536:
Local refinement of stator-rotor interaction region in flagellar motor of wild type Borrelia burgdorferi

EMDB-0537:
cryo-ET flagellar motor structure of motB deletion Borrelia burgdorferi

EMDB-0538:
Local refinement for the in-situ flagellar motor structure of motB deletion Borrelia burgdorferi

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News

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

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Mar 5, 2020. Novel coronavirus structure data

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

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Aug 12, 2020. Covid-19 info

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