[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,871 items for (author: bu & h)

PDB-9snk:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

PDB-9t5x:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

PDB-31ic:
Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with B11 nanobody
Method: single particle / : Li A, Pike ACW, Baronina A, Rodstrom KEJ, Pascoa TC, Chi G, Stefanic S, Carpenter EP, Bullock AN, Dong YY, Sauer DB

EMDB-72260:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.047, RP.057 and RP.035
Method: single particle / : Barrett JR, Ward AB

EMDB-72265:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.093, RP.073 and RP.063
Method: single particle / : Barrett JR, Ward AB

EMDB-72294:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.092 and RP.052
Method: single particle / : Barrett JR, Ward AB

PDB-9q69:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.047, RP.057 and RP.035
Method: single particle / : Barrett JR, Ward AB

PDB-9q6b:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.093, RP.073 and RP.063
Method: single particle / : Barrett JR, Ward AB

PDB-9q7c:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.092 and RP.052
Method: single particle / : Barrett JR, Ward AB

EMDB-55863:
Structure of echovirus 18 in complex with neonatal Fc receptor
Method: single particle / : Mukhamedova L, Plevka P

EMDB-55864:
Structure of echovirus 18, activated particle
Method: single particle / : Mukhamedova L, Plevka P

EMDB-55865:
Structure of echovirus 18, empty particle
Method: single particle / : Mukhamedova L, Plevka P

EMDB-65855:
In situ subtomogram average of Hodarchaeales HC1 actin filament
Method: subtomogram averaging / : Imachi H, Nobu MK, Ishii S, Hashiguchi H, Hirakata Y, Hosogi N, Ikuta T, Isaji Y, Miyata M, Miyazaki M, Morono Y, Murata K, Nakagawa S, Narita A, Ogawara M, Okada S, Saito Y, Sakai S, Shimamura S, Tahara YO, Takaki Y, Takano Y, Tasumi E, Uematsu K, Yoshimura T, Takai K

PDB-9wc4:
Hodarchaeales HC1 actin filament
Method: subtomogram averaging / : Imachi H, Nobu MK, Ishii S, Hashiguchi H, Hirakata Y, Hosogi N, Ikuta T, Isaji Y, Miyata M, Miyazaki M, Morono Y, Murata K, Nakagawa S, Narita A, Ogawara M, Okada S, Saito Y, Sakai S, Shimamura S, Tahara YO, Takaki Y, Takano Y, Tasumi E, Uematsu K, Yoshimura T, Takai K

EMDB-76853:
HIV-1 Gag (CASP1NCSP2p6) assembled with core encapsidation signal - C1 symmetry
Method: single particle / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-76854:
HIV-1 Gag (CASP1NCSP2p6) assembled with core encapsidation signal - C6 symmetry
Method: single particle / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-76863:
HIV-1 Gag (CASP1NCSP2p6) assembled with core encapsidation signal - tomography map
Method: subtomogram averaging / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-76864:
HIV-1 Gag (CASP1NCSP2p6) assembled with dimerization signal - tomography map
Method: subtomogram averaging / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-77042:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77043:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77047:
Apoferritin with crossed laser phase plate (xLPP), xLPP-off, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-66346:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-66347:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-66348:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-69899:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-69900:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-69901:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-54763:
Echovirus 18 particle missing three pentamers in situ, symmetrized reconstruction (C3)
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-73380:
Pr-pr homodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-73612:
Pr-Pfr heterodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

PDB-9ys3:
Pr-pr homodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

PDB-9yxn:
Pr-Pfr heterodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-71908:
QS 70S ribosome purified from FN200 cells
Method: single particle / : Ortega J, Arpin D

EMDB-54506:
Echovirus 18 particle missing two pentamers in situ, symmetrized reconstruction (C2)
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-54510:
Echovirus 18 particle missing two pentamers in situ, asymmetric reconstruction
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-54622:
Echovirus 18 in situ, virion, I4
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-54484:
Echovirus 18 in situ, virion, C1
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-54764:
Echovirus 18 particle missing one pentamer in situ, asymmetric reconstruction
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-54765:
Echovirus 18 particle missing three pentamers in situ, asymmetric reconstruction
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-55096:
Echovirus 18 particle missing one pentamer in situ, symmetrized reconstruction (C5)
Method: single particle / : Mukhamedova L, Plevka P, Trebichalska Z, Novacek J

EMDB-66444:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66445:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66446:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66447:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66448:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66449:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0w:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0x:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0y:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66192:
Cyro-EM structure of the ACT-451840-bound PfMDR1
Method: single particle / : Zhao Z, Li J, Wang X, Liu X, Wang N, Xu H, Quan C, Kato N, Deng D, Jing X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more