[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 130 items for (author: borst & a)

EMDB-72769:
RSV-F SC-DM bound to a designed protein minibinder, cb13
Method: single particle / : Borst AJ, Skotheim R

PDB-9ycf:
RSV-F SC-DM bound to a designed protein minibinder, cb13
Method: single particle / : Borst AJ, Skotheim R

EMDB-70890:
C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Weidle C, Carr KD, Alexis C, Borst AJ

PDB-9ov5:
C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Weidle C, Carr KD, Alexis C, Borst AJ

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

PDB-9orp:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-70605:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

EMDB-70685:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

PDB-9om3:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

PDB-9op9:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

EMDB-70128:
ZnO Nucleated Z4-C3i Trimer Within the Octahedral Z4-Cage Nanoparticle
Method: single particle / : Borst AJ

EMDB-70146:
Octahedral Z4-Cage Nanoparticle
Method: single particle / : Borst AJ

PDB-9o59:
ZnO Nucleated Z4-C3i Trimer Within the Octahedral Z4-Cage Nanoparticle
Method: single particle / : Borst AJ

PDB-9o5q:
Octahedral Z4-Cage Nanoparticle
Method: single particle / : Borst AJ

EMDB-75290:
cryoEM map for soluble OmpA beta-barrel WRAPs
Method: single particle / : Courbet A, Mihaljevic L

EMDB-75291:
cryoEM map of OmpA helical WRAP
Method: single particle / : Courbet A, Mihaljevic L

EMDB-75763:
Cryo-EM determined structure of designed nanoparticle O43-TM
Method: single particle / : Carr KD, Borst AJ, Weidle C

PDB-11kc:
Cryo-EM determined structure of designed nanoparticle O43-TM
Method: single particle / : Carr KD, Borst AJ, Weidle C

EMDB-49373:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

EMDB-49405:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1
Method: single particle / : Borst AJ, Weidle C

PDB-9nfu:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

PDB-9nh7:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Method: single particle / : Borst AJ, Weidle C

EMDB-48271:
CryoEM Structure of Zaire Ebola Virus Envelope Glycoprotein GP
Method: single particle / : Weidle C, Borst AJ

PDB-9mha:
CryoEM Structure of Zaire Ebola Virus Envelope Glycoprotein GP
Method: single particle / : Weidle C, Borst AJ

EMDB-47340:
De novo calcium channel hexamer, CalC6_3 with DHR extensions
Method: single particle / : Weidle C, Liu Y, Borst AJ

EMDB-47356:
De novo calcium channel heptamer, CalC6_3 with DHR extensions. Off target multimerization state
Method: single particle / : Weidle C, Liu Y, Borst AJ

PDB-9dzw:
De novo calcium channel hexamer, CalC6_3 with DHR extensions
Method: single particle / : Weidle C, Liu Y, Borst AJ

PDB-9e0h:
De novo calcium channel heptamer, CalC6_3 with DHR extensions. Off target multimerization state
Method: single particle / : Weidle C, Liu Y, Borst AJ

EMDB-48223:
De novo designed minibinder complexed with Clostridioides difficile Toxin B
Method: single particle / : Miletic S, Li Z, Ragotte RJ, Melnyk R

PDB-9mf4:
De novo designed minibinder complexed with Clostridioides difficile Toxin B
Method: single particle / : Miletic S, Li Z, Ragotte RJ, Melnyk R

EMDB-48093:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Method: single particle / : Borst AJ

EMDB-48101:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 3 Fabs
Method: single particle / : Borst AJ

EMDB-48102:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C4 Reconstruction]
Method: single particle / : Borst AJ

EMDB-70264:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C1 Reconstruction]
Method: single particle / : Borst AJ

PDB-9eit:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Method: single particle / : Borst AJ

PDB-9eje:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 3 Fabs
Method: single particle / : Borst AJ

PDB-9ejf:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C4 Reconstruction]
Method: single particle / : Borst AJ

PDB-9o9v:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C1 Reconstruction]
Method: single particle / : Borst AJ

EMDB-47128:
Cryo-EM structure of the T33-549 tetrahedral cage
Method: single particle / : Redler R, Coudray N, Lubner J, Wang S, Baker D, Ekiert DC, Bhabha G

PDB-9drl:
Cryo-EM structure of the T33-549 tetrahedral cage
Method: single particle / : Redler R, Coudray N, Lubner J, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-45739:
CryoEM Strucuture of TcdB in complex with De Novo Minibinder fzd48
Method: single particle / : Weidle C, Carr KD, Borst AJ

PDB-9cm5:
CryoEM Strucuture of TcdB in complex with De Novo Minibinder fzd48
Method: single particle / : Weidle C, Carr KD, Borst AJ

EMDB-42917:
De novo designed KWOCA 18 nanoparticle - Assembly in D2 symmetry
Method: single particle / : Antanasijevic A, Ward AB

EMDB-42919:
De novo designed KWOCA 18 nanoparticle - Assembly in D5 symmetry
Method: single particle / : Antanasijevic A, Ward AB

EMDB-42921:
De novo designed KWOCA 70 nanoparticle - Assembly in D2 symmetry
Method: single particle / : Antanasijevic A, Ward AB

EMDB-42924:
De novo designed KWOCA 70 nanoparticle - Assembly in D3 symmetry
Method: single particle / : Antanasijevic A, Ward AB

EMDB-47326:
Catalytic domain of Dihydrolipoamide Succinytransferase
Method: single particle / : Carr KD, Borst AJ, Weidle C

PDB-9dz8:
Catalytic domain of Dihydrolipoamide Succinytransferase
Method: single particle / : Carr KD, Borst AJ, Weidle C

EMDB-47327:
Computationally Designed Bifaceted Protein Nanomaterial pD5-14
Method: single particle / : Carr KD, Borst AJ, Weidle C

PDB-9dze:
Computationally Designed Bifaceted Protein Nanomaterial pD5-14
Method: single particle / : Carr KD, Borst AJ, Weidle C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more