[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 103 items for (author: beren & c)

EMDB-19426:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-19427:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-19428:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-19429:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rpy:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rpz:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rq0:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rq2:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-16882:
Human Coronavirus HKU1 spike glycoprotein
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17076:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17077:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (1-up state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17078:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (3-up state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17079:
Human Coronavirus HKU1 W89A spike glycoprotein incubated with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17080:
Local refinement of the Human Coronavirus HKU1 spike glycoprotein
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17081:
Local refinement of the Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17082:
Local refinement of the Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (3-up state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17083:
Local refinement of the Human Coronavirus HKU1 W89A spike glycoprotein incubated with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

PDB-8ohn:
Human Coronavirus HKU1 spike glycoprotein
Method: single particle / : Pronker MF, Hurdiss DL

PDB-8opm:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Pronker MF, Creutznacher R, Hurdiss DL

PDB-8opn:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (1-up state)
Method: single particle / : Pronker MF, Creutznacher R, Hurdiss DL

PDB-8opo:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (3-up state)
Method: single particle / : Pronker MF, Creutznacher R, Hurdiss DL

EMDB-16144:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL, Drulyte I

PDB-8bon:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL

EMDB-16480:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 10D12 heavy-chain-only antibody (3 RBDs up)
Method: single particle / : Serna Martin I, Hurdiss DL

EMDB-16481:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 10D12 heavy-chain-only antibody (2 RBDs up)
Method: single particle / : Serna Martin I, Hurdiss DL

EMDB-16490:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 10D12 heavy-chain-only antibody (local refinement)
Method: single particle / : Serna Martin I, Hurdiss DL

PDB-8c8p:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 10D12 heavy-chain-only antibody (local refinement)
Method: single particle / : Serna Martin I, Hurdiss DL

EMDB-11953:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Composite Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-11954:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 2)
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14810:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Consensus Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14811:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Focused Refinement
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-13549:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 46C12 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

EMDB-13550:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

EMDB-13563:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

EMDB-13564:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 37F1 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

PDB-7pnm:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 46C12 antibody Fab fragment
Method: single particle / : Hurdiss DL

PDB-7pnq:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment
Method: single particle / : Hurdiss DL

PDB-7po5:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment
Method: single particle / : Hurdiss DL

EMDB-14250:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 87G7 antibody Fab fragment
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14271:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 87G7 antibody Fab fragment (local refinement)
Method: single particle / : Hurdiss DL, Drulyte I

PDB-7r40:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 87G7 antibody Fab fragment
Method: single particle / : Hurdiss DL

EMDB-13190:
P5C3 is a potent fab neutralizer
Method: single particle / : perez L

EMDB-13265:
the local resolution of Fab p5c3.
Method: single particle / : perez L

EMDB-13415:
MaP OF P5C3RBD Interface
Method: single particle / : Perez L

PDB-7p40:
P5C3 is a potent fab neutralizer
Method: single particle / : perez L

PDB-7phg:
MaP OF P5C3RBD Interface
Method: single particle / : Perez L

EMDB-23672:
Structural basis for broad coronavirus neutralization
Method: single particle / : Sauer MM, Acton OJ, Veesler D

EMDB-23674:
MERS-CoV S bound to the broadly neutralizing B6 Fab fragment (C3 refinement)
Method: single particle / : Sauer MM, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7m5e:
MERS-CoV S bound to the broadly neutralizing B6 Fab fragment (C3 refinement)
Method: single particle / : Sauer MM, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-11812:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 47D11 neutralizing antibody Fab fragment
Method: single particle / : Fedry J, Hurdiss DL, Wang C, Li W, Obal G, Drulyte I, Howes SC, van Kuppeveld FJM, Foerster F, Bosch BJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more