[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 563 items for (author: beat & f)

EMDB-70676:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

PDB-9oox:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

EMDB-71803:
HDV particle subtomogram reconstruction
Method: subtomogram averaging / : Itskanov S, Lansdon EB

EMDB-71804:
Linear arrangement of the HDV 311-RNP
Method: single particle / : Itskanov S, Lansdon EB

EMDB-71805:
Twisted arrangement of the HDV 311-RNP
Method: single particle / : Itskanov S, Lansdon EB

EMDB-71806:
Twisted arrangement of the HDV 311-RNP, Multibody refinement, Body 1
Method: single particle / : Itskanov S, Lansdon EB

EMDB-71807:
HDAg complex with 86-pRNA, Body1
Method: single particle / : Itskanov S, Lansdon EB

EMDB-71808:
HDAg complex with 86-pRNA, Body2
Method: single particle / : Itskanov S, Lansdon EB

PDB-9prc:
HDAg complex with 86-pRNA, Body1
Method: single particle / : Itskanov S, Lansdon EB

EMDB-54480:
Tomogram of unbudded yeast cell overexpressing Ldm1
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54483:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-72715:
Cryo-EM structure of conoid fiber from Toxoplasma gondii (24-nm repeat)
Method: single particle / : Zeng J, Zhang R

EMDB-72717:
Cryo-EM structure of intraconoidal microtubule 2 (ICMT2) from Toxoplasma gondii (8-nm repeat)
Method: single particle / : Zeng J, Zhang R

EMDB-72718:
Cryo-EM structure of intraconoidal microtubule 1 (ICMT1) from Toxoplasma gondii (8-nm repeat)
Method: single particle / : Zeng J, Zhang R

EMDB-72719:
Cryo-EM structure of the apical region of subpellicular microtubule (SPMT) from Toxoplasma gondii (8-nm repeat)
Method: single particle / : Zeng J, Zhang R

PDB-9y9z:
Cryo-EM structure of conoid fiber from Toxoplasma gondii (24-nm repeat)
Method: single particle / : Zeng J, Zhang R

PDB-9ya1:
Cryo-EM structure of intraconoidal microtubule 2 (ICMT2) from Toxoplasma gondii (8-nm repeat)
Method: single particle / : Zeng J, Zhang R

PDB-9ya2:
Cryo-EM structure of intraconoidal microtubule 1 (ICMT1) from Toxoplasma gondii (8-nm repeat)
Method: single particle / : Zeng J, Zhang R

PDB-9ya3:
Cryo-EM structure of the apical region of subpellicular microtubule (SPMT) from Toxoplasma gondii (8-nm repeat)
Method: single particle / : Zeng J, Zhang R

EMDB-54486:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor (unbudded region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54487:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor(bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54489:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54497:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-72716:
Cryo-EM structure of pre-conoid ring 2 (PCR P2 ring)from Toxoplasma gondii
Method: single particle / : Zeng J, Zhang R

PDB-9ya0:
Cryo-EM structure of pre-conoid ring 2 (PCR P2 ring)from Toxoplasma gondii
Method: single particle / : Zeng J, Zhang R

EMDB-70663:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70666:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oog:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oom:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-47126:
Cryo-EM map of the human TREX-2.1 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-70664:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9ook:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9omg:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-54081:
GluA4 in complex with TARP-2, open state, map of LBD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54217:
GluA4 in complex with TARP-2, open state, map of TMD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54225:
GluA4 in complex with TARP-2, Resting I state, map of TMD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54237:
GluA4 in complex with TARP-2, Resting I state, map of LBD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54250:
GluA4, Resting state, map of LBD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-52862:
GluA4 in complex with TARP-2, resting state, structure of N-terminal domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-53031:
GluA4 in complex with TARP-2, resting state I, structure of TMD/LBD
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-53285:
GluA4, resting state, structure of TMD/LBD
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54065:
GluA4 in complex with TARP-2, Resting II state, structure of TMD/LBD domains
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54069:
GluA4 in complex with TARP-2, open state, structure of TMD/LBD domains
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54080:
GluA4 in complex with TARP-2, desensitized state, structure of TMD/LBD domains
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54083:
GluA4 in complex with TARP-2, Desensitized state, structure of TMD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54092:
GluA4 in complex with TARP-2, Resting II state, structure of TMD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

PDB-9igz:
GluA4 in complex with TARP-2, resting state, structure of N-terminal domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

PDB-9qdn:
GluA4 in complex with TARP-2, resting state I, structure of TMD/LBD
Method: single particle / : Vega-Gutierrez C, Herguedas B

PDB-9qpw:
GluA4, resting state, structure of TMD/LBD
Method: single particle / : Vega-Gutierrez C, Herguedas B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more