[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 320 items for (author: bate & n)

EMDB-53655:
Human Adenovirus D 10 Fiber Shaft by Focussed Refinement
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, T Young M, Parker AL, Bhella D

EMDB-53736:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

PDB-9r78:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

EMDB-52748:
Ku from Mycobacterium tuberculosis bound to DNA
Method: single particle / : Chaplin AK, Zahid S

PDB-9i91:
Ku from Mycobacterium tuberculosis bound to DNA
Method: single particle / : Chaplin AK, Zahid S

EMDB-47692:
Off-pathway Mycobacterium tuberculosis transcription initiation promoter complex (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47695:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 7-mer RNA and disordered Beta' Lid element (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47706:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and disordered Sigma-A region 4 domain (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47707:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and closed Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47708:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 5-mer RNA and open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47709:
De Novo Mycobacterium tuberculosis transcription initiation pre-RPO promoter complex with open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-47710:
De novo backtracked transcription elongation complex of Mycobacterium tuberculosis RNA polymerase on a linear DNA fragment (TEC-Backtracked)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e7v:
Off-pathway Mycobacterium tuberculosis transcription initiation promoter complex (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e7y:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 7-mer RNA and disordered Beta' Lid element (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e84:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and disordered Sigma-A region 4 domain (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e85:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and closed Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e86:
De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 5-mer RNA and open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e87:
De Novo Mycobacterium tuberculosis transcription initiation pre-RPO promoter complex with open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

PDB-9e88:
De novo backtracked transcription elongation complex of Mycobacterium tuberculosis RNA polymerase on a linear DNA fragment (TEC-Backtracked)
Method: single particle / : Brewer JJ, Campbell EA, Darst SA

EMDB-53284:
Pseudomonas aeruginosa Ptx2 toxin
Method: single particle / : Shatskiy D, Belyy A

PDB-9qpv:
Pseudomonas aeruginosa Ptx2 toxin
Method: single particle / : Shatskiy D, Belyy A

EMDB-18795:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 4.3 in detergent
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

EMDB-18796:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in nanodisc
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

EMDB-18797:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in detergent
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

EMDB-18798:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the ground state
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

EMDB-18799:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the M state
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

EMDB-18800:
Cryo-EM structure of the microbial rhodopsin CryoR2 at pH 8.0 in detergent
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

PDB-8r0k:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 4.3 in detergent
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

PDB-8r0l:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in nanodisc
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

PDB-8r0m:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in detergent
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

PDB-8r0n:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the ground state
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

PDB-8r0o:
Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the M state
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

PDB-8r0p:
Cryo-EM structure of the microbial rhodopsin CryoR2 at pH 8.0 in detergent
Method: single particle / : Kovalev K, Marin E, Stetsenko A, Guskov A, Lamm GHU

EMDB-18609:
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 8.0
Method: single particle / : Kovalev K, Podoliak E, Lamm GHU, Marin E, Stetsenko A, Guskov A

EMDB-18610:
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 4.3
Method: single particle / : Kovalev K, Podoliak E, Lamm GHU, Marin E, Stetsenko A, Guskov A

PDB-8qqz:
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 8.0
Method: single particle / : Kovalev K, Podoliak E, Lamm GHU, Marin E, Stetsenko A, Guskov A

PDB-8qr0:
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 4.3
Method: single particle / : Kovalev K, Podoliak E, Lamm GHU, Marin E, Stetsenko A, Guskov A

EMDB-29951:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#1 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29952:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#2 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29953:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#3 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29954:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#4 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29955:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#5 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29956:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#6 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29958:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#7 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29959:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#8 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29960:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#9 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29961:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#10 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29962:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#11 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29964:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#12 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

EMDB-29965:
CryoEM structure of beta-2-adrenergic receptor in complex with nucleotide-free Gs heterotrimer (#13 of 20)
Method: single particle / : Papasergi-Scott MM, Skiniotis G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more