[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 37 items for (author: atkinson & ce)

EMDB-29044:
Structure of Zanidatamab bound to HER2
Method: single particle / : Worrall LJ, Atkinson CE, Sanches M, Dixit S, Strynadka NCJ

PDB-8ffj:
Structure of Zanidatamab bound to HER2
Method: single particle / : Worrall LJ, Atkinson CE, Sanches M, Dixit S, Strynadka NCJ

EMDB-13242:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7r:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13241:
E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13243:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13244:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13245:
E. faecalis 70S ribosome with P-tRNA, state IV
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7q:
E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7s:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7t:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7u:
E. faecalis 70S ribosome with P-tRNA, state IV
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-23482:
CryoEM structure of Escherichia coli PBP1b
Method: single particle / : Caveney NA, Workman SD

EMDB-22701:
Structure of the EPEC type III secretion injectisome EspA filament
Method: helical / : Lyons BJE, Atkinson CE

EMDB-22589:
Cryo-EM structure of the nonameric EscV cytosolic domain from the type III secretion system
Method: single particle / : Majewski DD, Lyons BJE

EMDB-22590:
Cryo-EM map of the stacked nonameric EscV cytosolic domain from the type III secretion system
Method: single particle / : Majewski DD, Lyons BJE, Atkinson CE, Strynadka NCJ

EMDB-20310:
Salmonella SPI-1 injectisome NC-base class 1
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20311:
Salmonella SPI-1 injectisome NC-base class 2
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20312:
Salmonella SPI-1 injectisome needle complex with assembled needle
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20313:
Salmonella SPI-1 injectisome needle complex with a trapped needle and the InvG secretin periplasmic gate in a partially unlocked state
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20314:
Salmonella SPI-1 injectisome needle complex with a trapped needle and the InvG secretin periplasmic gate in an unlocked state
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20315:
InvG secretin domain beta-barrel from Salmonella SPI-1 injectisome NC-base
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20316:
Focussed refinement of InvGN0N1:SpaPQR:PrgHK from Salmonella SPI-1 injectisome NC-base
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20317:
Focussed refinement of InvGN0N1:SpaPQR:PrgIJ from the Salmonella SPI-1 injectisome needle complex
Method: single particle / : Hu J, Worrall LJ, Vuckovic M, Hong C, Atkinson CE, Yu Z, Strynadka NCJ

EMDB-20556:
Focussed refinement of InvGN0N1:PrgHK:SpaPQR:PrgIJ from Salmonella SPI-1 injectisome NC-base
Method: single particle / : Hu J, Worrall LJ, Strynadka NCJ, Hong C, Atkinson CE, Yu Z

EMDB-10098:
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Method: single particle / : Kasari V, Pochopien AA, Margus T, Murina V, Turnbull K, Zhou Y, Nissan T, Graf M, Novacek J, Atkinson GC, Johansson MJO, Wilson DN, Hauryliuk V

PDB-6s47:
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Method: single particle / : Kasari V, Pochopien AA, Margus T, Murina V, Turnbull K, Zhou Y, Nissan T, Graf M, Novacek J, Atkinson GC, Johansson MJO, Wilson DN, Hauryliuk V

EMDB-9390:
Structure of the assembled ATPase EscN from the enteropathogenic E. coli (EPEC) type III secretion system
Method: single particle / : Majewski DD, Worrall LJ

EMDB-9391:
Structure of the assembled ATPase EscN in complex with its central stalk EscO from the enteropathogenic E. coli (EPEC) type III secretion system
Method: single particle / : Majewski DD, Worrall LJ

EMDB-8913:
Structure of the periplasmic domains of PrgH and PrgK from the assembled Salmonella type III secretion injectisome needle complex
Method: single particle / : Hu J, Worrall LJ

EMDB-8914:
Structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG in the open gate state
Method: single particle / : Hu J, Worrall LJ

EMDB-8915:
Structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG (residues 176-end) in the open gate state
Method: single particle / : Hu J, Worrall LJ

EMDB-8924:
Structure of the Salmonella SPI-1 type III secretion injectisome needle filament
Method: single particle / : Hu J, Hong C

EMDB-0176:
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Method: single particle / : Crowe-McAuliffe C, Graf M

EMDB-0177:
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

PDB-6ha1:
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

PDB-6ha8:
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more