[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: ackle & f)

EMDB-70077:
Plasmodium falciparum 20S proteasome bound to inhibitor 159
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

EMDB-70078:
Plasmodium falciparum 20S proteasome bound to inhibitor 296
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

PDB-9o3e:
Plasmodium falciparum 20S proteasome bound to inhibitor 159
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

PDB-9o3f:
Plasmodium falciparum 20S proteasome bound to inhibitor 296
Method: single particle / : Han Y, Deng X, Ray S, Phillips M

EMDB-17844:
Escherichia coli SduA complex
Method: single particle / : Loeff L, Jinek M, Asanovic I, Boneberg F, Pfleiderer MM, Ferdigg A, Ackle F, Martinez J

EMDB-17845:
Escherichia coli SduA complex bound to DNA
Method: single particle / : Loeff L, Jinek M, Asanovic I, Boneberg F, Pfleiderer MM, Ferdigg A, Ackle F, Martinez J

EMDB-17127:
Cryo-EM structure of human tRNA ligase RTCB in complex with human PYROXD1.
Method: single particle / : Loeff L, Kroupova A, Asanovic I, Boneberg F, Pfleiderer MM, Ferdigg A, Ackle F, Martinez J, Jinek M

PDB-8orj:
Cryo-EM structure of human tRNA ligase RTCB in complex with human PYROXD1.
Method: single particle / : Loeff L, Kroupova A, Asanovic I, Boneberg F, Pfleiderer MM, Ferdigg A, Ackle F, Martinez J, Jinek M

EMDB-19366:
Influenza polymerase A/H7N9-4M (ENDO(R) | Core1)
Method: single particle / : Arragain B, Cusack S

EMDB-19367:
Influenza polymerase A/H7N9-4M (ENDO(R) | Core2)
Method: single particle / : Arragain B, Cusack S

EMDB-19368:
Influenza polymerase A/H7N9-4M replication complex, an asymmetric polymerase dimer bound to human ANP32A
Method: single particle / : Arragain B, Cusack S

EMDB-19369:
Influenza polymerase A/H7N9-4M replicase minus 627(R) (from "Influenza polymerase A/H7N9-4M replication complex" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19382:
Influenza polymerase A/H7N9-4M encapsidase plus 627(R) / human ANP32A (from "Influenza polymerase A/H7N9-4M replication complex" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19383:
Influenza B polymerase, monomeric encapsidase with 5' cRNA hook bound
Method: single particle / : Arragain B, Cusack S

EMDB-19384:
Monomeric apo-influenza B polymerase, encapsidase conformation
Method: single particle / : Arragain B, Cusack S

EMDB-19385:
Pseudo-symmetrical influenza B polymerase apo-dimer, encapsidase moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19386:
Pseudo-symmetrical influenza B polymerase apo-dimer, ENDO(T) moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19387:
Pseudo-symmetrical influenza B polymerase apo-dimer, ENDO(R) moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19388:
Pseudo-symmetrical influenza B polymerase apo-dimer, ENDO(E) moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19389:
Pseudo-symmetrical influenza B polymerase apo-dimer, core-only moeity (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19390:
Influenza B polymerase pseudo-symmetrical apo-dimer (FluPol(E)|FluPol(S))
Method: single particle / : Arragain B, Cusack S

EMDB-19391:
Influenza B polymerase, replicase (from "Influenza B polymerase apo-trimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19392:
Influenza B polymerase apo-trimer
Method: single particle / : Arragain B, Cusack S

EMDB-19393:
Influenza B polymerase, encapsidase plus 627(R) / human ANP32A (from "Influenza B polymerase apo-trimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-19394:
Influenza B polymerase, replication complex, an asymmetric polymerase dimer bound to human ANP32A (from "Influenza B polymerase apo-trimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rmp:
Influenza polymerase A/H7N9-4M (ENDO(R) | Core1)
Method: single particle / : Arragain B, Cusack S

PDB-8rmq:
Influenza polymerase A/H7N9-4M (ENDO(R) | Core2)
Method: single particle / : Arragain B, Cusack S

PDB-8rmr:
Influenza polymerase A/H7N9-4M replication complex, an asymmetric polymerase dimer bound to human ANP32A
Method: single particle / : Arragain B, Cusack S

PDB-8rms:
Influenza polymerase A/H7N9-4M replicase minus 627(R) (from "Influenza polymerase A/H7N9-4M replication complex" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rn0:
Influenza polymerase A/H7N9-4M encapsidase plus 627(R) / human ANP32A (from "Influenza polymerase A/H7N9-4M replication complex" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rn1:
Influenza B polymerase, monomeric encapsidase with 5' cRNA hook bound
Method: single particle / : Arragain B, Cusack S

PDB-8rn2:
Monomeric apo-influenza B polymerase, encapsidase conformation
Method: single particle / : Arragain B, Cusack S

PDB-8rn3:
Pseudo-symmetrical influenza B polymerase apo-dimer, encapsidase moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rn4:
Pseudo-symmetrical influenza B polymerase apo-dimer, ENDO(T) moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rn5:
Pseudo-symmetrical influenza B polymerase apo-dimer, ENDO(R) moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rn6:
Pseudo-symmetrical influenza B polymerase apo-dimer, ENDO(E) moiety (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rn7:
Pseudo-symmetrical influenza B polymerase apo-dimer, core-only moeity (from "Influenza B polymerase pseudo-symmetrical dimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rn8:
Influenza B polymerase pseudo-symmetrical apo-dimer (FluPol(E)|FluPol(S))
Method: single particle / : Arragain B, Cusack S

PDB-8rn9:
Influenza B polymerase, replicase (from "Influenza B polymerase apo-trimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rna:
Influenza B polymerase apo-trimer
Method: single particle / : Arragain B, Cusack S

PDB-8rnb:
Influenza B polymerase, encapsidase plus 627(R) / human ANP32A (from "Influenza B polymerase apo-trimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

PDB-8rnc:
Influenza B polymerase, replication complex, an asymmetric polymerase dimer bound to human ANP32A (from "Influenza B polymerase apo-trimer" | Local refinement)
Method: single particle / : Arragain B, Cusack S

EMDB-43746:
Plasmodium falciparum 20S proteasome bound to an inhibitor
Method: single particle / : Han Y, Deng X, Ray S, Chen Z, Phillips M

PDB-8w2f:
Plasmodium falciparum 20S proteasome bound to an inhibitor
Method: single particle / : Han Y, Deng X, Ray S, Chen Z, Phillips M

EMDB-36948:
Human gamma-secretase in complex with a substrate mimetic
Method: single particle / : Shi YG, Zhou R, Wolfe MS

PDB-8k8e:
Human gamma-secretase in complex with a substrate mimetic
Method: single particle / : Shi YG, Zhou R, Wolfe MS

EMDB-15244:
Tomogram of an Ebola VLP composed of GP, VP40, NP, VP24 and VP35 at pH 7.4 (Figure 1A-D)
Method: electron tomography / : Winter SL, Chlanda P

EMDB-15268:
Tomogram of an Ebola VLP composed of VP40 at pH 4.5 (Figure 1J)
Method: electron tomography / : Winter SL, Chlanda P

EMDB-15951:
Tomogram of an EBOV-infected Huh7 cell showing a late endosome with internalized EBOV particles
Method: electron tomography / : Winter SL, Chlanda P

EMDB-15956:
Tomogram of an extracellular EBOV particle adjacent to an EBOV-infected Huh7 cell
Method: electron tomography / : Winter SL, Chlanda P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more