[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 471 items for (author: li & sb)

EMDB-19798:
human PLD3 homodimer structure
Method: single particle / : Lammens K

PDB-8s86:
human PLD3 homodimer structure
Method: single particle / : Lammens K

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-29898:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

PDB-8gag:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

PDB-8ufa:
Eastern equine encephalitis virus (PE-6) VLP (asymmetric unit)
Method: single particle / : Adams LJ, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-8ufb:
Eastern equine encephalitis virus (PE-6) VLP in complex with full-length VLDLR (asymmetric unit)
Method: single particle / : Adams LJ, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-8ufc:
Eastern equine encephalitis virus (PE-6) VLP in complex with VLDLR LA(1-2) (asymmetric unit)
Method: single particle / : Adams LJ, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-29227:
cryoEM structure of a broadly neutralizing antibody STI-9167
Method: single particle / : Bajic G

PDB-8sqn:
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-16805:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-16807:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8cr9:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8crb:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-17819:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

EMDB-17849:
XBB 1.0 RBD bound to P4J15 (Global)
Method: single particle / : Duhoo Y, Lau K

EMDB-17850:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

PDB-8pq2:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

PDB-8psd:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

EMDB-28537:
cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167
Method: single particle / : Bajic G

PDB-8eqf:
cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167
Method: single particle / : Bajic G

EMDB-26977:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-adjacent state
Method: helical / : Du Pont KE, Aydin H

EMDB-26984:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-distal state
Method: helical / : Du Pont KE, Aydin H

PDB-8ct1:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-adjacent state
Method: helical / : Du Pont KE, Aydin H

PDB-8ct9:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-distal state
Method: helical / : Du Pont KE, Aydin H

EMDB-16963:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

PDB-8olu:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

EMDB-29930:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

PDB-8gcc:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

EMDB-16076:
Helical shell of CCMV capsid protein on DNA origami 6HB-2k
Method: single particle / : Kumpula EP, Seitz I, Kostiainen MA, Huiskonen JT

EMDB-16077:
Inner helical shell of CCMV capsid protein on DNA origami 6HB-10k
Method: single particle / : Kumpula EP, Seitz I, Kostiainen MA, Huiskonen JT

EMDB-16078:
Outer helical shell of CCMV capsid protein on DNA origami 6HB-10k
Method: single particle / : Kumpula EP, Seitz I, Kostiainen MA, Huiskonen JT

EMDB-16079:
Helical shell cap of CCMV capsid protein on DNA origami 6HB-2k
Method: single particle / : Kumpula EP, Seitz I, Kostiainen MA, Huiskonen JT

EMDB-16080:
Helical shell of CCMV capsid protein on DNA origami 24HB-2.5k
Method: single particle / : Kumpula EP, Seitz I, Kostiainen MA, Huiskonen JT

PDB-8bi4:
Helical shell of CCMV capsid protein on DNA origami 6HB-2k
Method: single particle / : Kumpula EP, Seitz I, Kostiainen MA, Huiskonen JT

EMDB-29299:
Langya virus F glycoprotein ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-29300:
Mojiang virus F ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-8fmx:
Langya virus F glycoprotein ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-8fmy:
Mojiang virus F ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-26348:
I-F3b Cascade-TniQ full R-loop complex
Method: single particle / : Park JU, Mehrotra E, Kellogg EH

EMDB-26349:
I-F3b Cascade-TniQ partial R-loop complex
Method: single particle / : Park JU, Mehrotra E, Kellogg EH

EMDB-29458:
Alzheimer's disease paired-helical filament in complex with PET tracer GTP-1
Method: helical / : Merz GE, Tse E, Southworth DR

EMDB-25427:
Structure of KRAS G12V/HLA-A*03:01 in complex with antibody fragment V2
Method: single particle / : Wright KM, Gabelli SB

EMDB-15763:
Untreatment WT HIV-1 immature gag
Method: subtomogram averaging / : Waheed AA, Zhu Y, Agostino E, Naing L, Soheilian F, Song Y, Zhang P, Yoo S, Shlusher SB, Haughey N, Freed OE

EMDB-15764:
PDDC treatment HIV immature Gag
Method: subtomogram averaging / : Waheed AA, Zhu Y, Agostino E, Naing L, Soheilian F, Song Y, Zhang P, Yoo S, Shlusher SB, Haughey N, Freed OE

EMDB-17154:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (consensus and constituent map 1)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17155:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

EMDB-17156:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 2)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

EMDB-17157:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more