Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

SSU

Summary
Name:URIDINE-5'-PHOSPHOROTHIOATE
Synonyms:SP-SULFUR-SUBSTITUTED URIDINE
Formula:C9 H13 N2 O8 P S
Formal charge:0
Formula weight:340.247 Da
Component type:RNA LINKING

Chemical Identifiers

ProgramVersionName
ACDLabs10.045'-O-thiophosphonouridine
OpenEye OEToolkits1.5.01-[(2R,3R,4S,5R)-5-(dihydroxyphosphinothioyloxymethyl)-3,4-dihydroxy-oxolan-2-yl]pyrimidine-2,4-dione

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs10.04O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)COP(=S)(O)O
SMILES_CANONICALCACTVS3.341O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=S)N2C=CC(=O)NC2=O
SMILESCACTVS3.341O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=S)N2C=CC(=O)NC2=O
SMILES_CANONICALOpenEye OEToolkits1.5.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=S)(O)O)O)O
SMILESOpenEye OEToolkits1.5.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=S)(O)O)O)O
InChIInChI1.03InChI=1S/C9H13N2O8PS/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(19-8)3-18-20(16,17)21/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,21)/t4-,6-,7-,8-/m1/s1
InChIKeyInChI1.03NSEBKRRODBXALJ-XVFCMESISA-N

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon