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C7R

Summary
Name:2'-deoxy-5'-O-thiophosphonocytidine
Synonyms:2'-deoxy-5'-O-thiophosphonocytidine (thiophospho connection isoform 1)
Formula:C9 H14 N3 O6 P S
Formal charge:0
Formula weight:323.263 Da
Component type:DNA linking

Chemical Identifiers

ProgramVersionName
ACDLabs12.012'-deoxy-5'-O-thiophosphonocytidine
OpenEye OEToolkits2.0.4[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphinic acid

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01P(S)(O)(OCC1OC(CC1O)N2C=CC(=NC2=O)N)=O
InChIInChI1.03InChI=1S/C9H14N3O6PS/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(18-8)4-17-19(15,16)20/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,20)/t5-,6+,8+/m0/s1
InChIKeyInChI1.03FHBXKBNKQMSUIJ-SHYZEUOFSA-N
SMILES_CANONICALCACTVS3.385NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(S)=O)O2
SMILESCACTVS3.385NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(S)=O)O2
SMILES_CANONICALOpenEye OEToolkits2.0.4C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)S)O
SMILESOpenEye OEToolkits2.0.4C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)S)O

218500

PDB entries from 2024-04-17

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