C7R

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.44Å
O2	C2	doub	1.22Å	1.24Å
O4'	C1'	sing	1.44Å	1.41Å
O4'	C4'	sing	1.44Å	1.45Å
C1'	C2'	sing	1.54Å	1.54Å
C1'	N1	sing	1.46Å	1.50Å
C3'	C4'	sing	1.55Å	1.53Å
C3'	C2'	sing	1.55Å	1.52Å
C4'	C5'	sing	1.53Å	1.49Å
C2	N1	sing	1.35Å	1.39Å
C2	N3	sing	1.33Å	1.35Å
N1	C6	sing	1.36Å	1.37Å
N3	C4	doub	1.33Å	1.32Å
C5'	O5'	sing	1.43Å	1.38Å
O5'	P	sing	1.61Å	1.59Å
C6	C5	doub	1.35Å	1.34Å
C4	C5	sing	1.41Å	1.43Å
C4	N4	sing	1.38Å	1.34Å
OP1	P	doub	1.48Å	1.51Å
P	SP2	sing	2.12Å	1.95Å
P	OP3	sing	1.61Å	1.60Å
C5'	H5'2	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	H1	sing	0.97Å	0.95Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
N4	H42	sing	0.97Å	1.00Å
N4	H41	sing	0.97Å	1.00Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
SP2	HSP2	sing	1.35Å	1.30Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C4'	112.2°	110.9°
O3'	C3'	C2'	112.5°	110.9°
O3'	C3'	H3'	110.3°	110.9°
C3'	O3'	H1	109.5°	114.0°
O2	C2	N1	119.2°	119.5°
O2	C2	N3	121.8°	119.4°
C1'	O4'	C4'	110.2°	107.0°
O4'	C1'	C2'	108.0°	107.3°
O4'	C1'	N1	109.1°	109.9°
O4'	C1'	H1'	109.6°	109.9°
O4'	C4'	C3'	106.6°	103.7°
O4'	C4'	C5'	107.7°	110.6°
O4'	C4'	H4'	110.0°	110.6°
C2'	C1'	N1	114.0°	110.0°
C1'	C2'	C3'	104.1°	104.2°
C1'	C2'	H2'1	110.8°	110.6°
C1'	C2'	H2'2	110.8°	110.5°
C2'	C1'	H1'	107.9°	109.8°
C1'	N1	C2	118.9°	119.8°
C1'	N1	C6	120.7°	119.8°
N1	C1'	H1'	108.3°	110.0°
C4'	C3'	C2'	103.2°	102.1°
C3'	C4'	C5'	114.1°	110.6°
C3'	C4'	H4'	109.0°	110.6°
C4'	C3'	H3'	109.1°	110.9°
C2'	C3'	H3'	109.2°	110.8°
C3'	C2'	H2'1	110.8°	110.5°
C3'	C2'	H2'2	110.8°	110.4°
C4'	C5'	O5'	111.5°	109.5°
C4'	C5'	H5'2	109.0°	109.5°
C4'	C5'	H5'1	109.0°	109.4°
C5'	C4'	H4'	109.4°	110.5°
N1	C2	N3	119.0°	121.1°
C2	N1	C6	120.4°	120.4°
C2	N3	C4	120.7°	120.7°
N1	C6	C5	121.0°	119.2°
N1	C6	H6	119.5°	120.4°
N3	C4	C5	121.7°	119.7°
N3	C4	N4	117.4°	120.2°
C5'	O5'	P	118.2°	123.0°
O5'	C5'	H5'2	109.0°	109.5°
O5'	C5'	H5'1	108.9°	109.4°
O5'	P	OP1	106.3°	109.5°
O5'	P	SP2	106.5°	109.5°
O5'	P	OP3	101.7°	109.5°
C6	C5	C4	117.3°	119.0°
C6	C5	H5	121.3°	120.4°
C5	C6	H6	119.5°	120.4°
C5	C4	N4	120.9°	120.2°
C4	C5	H5	121.3°	120.6°
C4	N4	H42	120.0°	120.0°
C4	N4	H41	120.0°	120.0°
OP1	P	SP2	124.8°	109.5°
OP1	P	OP3	107.2°	109.5°
SP2	P	OP3	108.0°	109.4°
P	SP2	HSP2	102.0°	103.0°
P	OP3	HOP3	109.5°	114.0°
H5'2	C5'	H5'1	109.5°	109.5°
H2'1	C2'	H2'2	109.5°	110.5°
H42	N4	H41	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C4'	O4'	94.0°	155.1°
O3'	C3'	C2'	C1'	94.8°	139.0°
O3'	C3'	C4'	C2'	121.4°	118.2°
O3'	C3'	C4'	H3'	122.6°	123.7°
O3'	C3'	C2'	H3'	122.9°	123.6°
O3'	C3'	C4'	C5'	147.2°	86.3°
O3'	C3'	C4'	H4'	24.7°	36.5°
O3'	C3'	C2'	H2'1	24.3°	102.2°
O3'	C3'	C2'	H2'2	146.1°	20.3°
O2	C2	N1	C1'	2.2°	0.0°
O2	C2	N1	N3	179.4°	179.9°
O2	C2	N1	C6	180.0°	179.7°
O2	C2	N3	C4	179.4°	180.0°
O4'	C1'	C2'	N1	121.3°	119.5°
O4'	C1'	C2'	H1'	118.3°	119.4°
O4'	C1'	N1	H1'	119.2°	121.1°
C1'	O4'	C4'	C3'	17.6°	40.0°
O4'	C1'	C2'	C3'	17.0°	2.0°
C1'	O4'	C4'	C5'	105.2°	158.5°
O4'	C1'	N1	C2	99.6°	53.8°
O4'	C1'	N1	C6	82.7°	126.4°
C1'	O4'	C4'	H4'	135.6°	78.7°
O4'	C1'	C2'	H2'1	136.2°	116.7°
O4'	C1'	C2'	H2'2	102.1°	120.7°
C4'	O4'	C1'	C2'	0.3°	26.4°
C4'	O4'	C1'	N1	124.1°	145.9°
O4'	C4'	C3'	C5'	118.7°	118.6°
O4'	C4'	C3'	H4'	118.7°	118.6°
O4'	C4'	C3'	C2'	27.4°	36.9°
O4'	C4'	C5'	H4'	119.6°	122.8°
O4'	C4'	C5'	O5'	170.6°	68.6°
O4'	C4'	C5'	H5'2	69.0°	51.4°
O4'	C4'	C5'	H5'1	50.3°	171.5°
O4'	C4'	C3'	H3'	143.4°	81.2°
C4'	O4'	C1'	H1'	117.5°	92.9°
C2'	C1'	N1	H1'	120.1°	121.0°
C1'	C2'	C3'	C4'	26.4°	20.8°
C1'	C2'	C3'	H2'1	119.1°	118.8°
C1'	C2'	C3'	H2'2	119.1°	118.7°
C2'	C1'	N1	C2	139.7°	64.0°
C2'	C1'	N1	C6	38.1°	115.7°
C1'	C2'	C3'	H3'	142.3°	97.4°
C1'	C2'	H2'1	H2'2	122.5°	122.7°
N1	C1'	C2'	C3'	138.4°	121.5°
C1'	N1	C2	C6	177.7°	179.7°
C1'	N1	C2	N3	178.4°	179.9°
C1'	N1	C6	C5	178.2°	179.8°
N1	C1'	C2'	H2'1	102.5°	2.8°
N1	C1'	C2'	H2'2	19.2°	119.8°
C1'	N1	C6	H6	1.8°	0.0°
C4'	C3'	C2'	H3'	115.9°	118.1°
C3'	C4'	C5'	H4'	122.3°	122.9°
C3'	C4'	C5'	O5'	71.3°	177.1°
C3'	C4'	C5'	H5'2	49.0°	62.9°
C3'	C4'	C5'	H5'1	168.4°	57.2°
C4'	C3'	O3'	H1	180.0°	180.0°
C4'	C3'	C2'	H2'1	145.5°	139.5°
C4'	C3'	C2'	H2'2	92.7°	97.9°
C2'	C3'	C4'	C5'	91.3°	155.5°
C2'	C3'	C4'	H4'	146.1°	81.7°
C2'	C3'	O3'	H1	64.1°	67.3°
C3'	C2'	H2'1	H2'2	122.5°	122.5°
C3'	C2'	C1'	H1'	101.3°	117.3°
C4'	C5'	O5'	H5'2	120.3°	120.0°
C4'	C5'	O5'	H5'1	120.3°	120.0°
C4'	C5'	O5'	P	169.3°	180.0°
C4'	C5'	H5'2	H5'1	119.1°	120.0°
C5'	C4'	C3'	H3'	24.6°	37.4°
N1	C2	N3	C4	0.1°	0.0°
C2	N1	C6	C5	0.5°	0.5°
C2	N1	C1'	H1'	19.6°	174.9°
C2	N1	C6	H6	179.5°	179.7°
N3	C2	N1	C6	0.7°	0.2°
C2	N3	C4	C5	0.7°	0.0°
C2	N3	C4	N4	179.6°	180.0°
N1	C6	C5	H6	180.0°	179.8°
N1	C6	C5	C4	0.2°	0.5°
C6	N1	C1'	H1'	158.2°	5.3°
N1	C6	C5	H5	179.8°	179.8°
N3	C4	C5	C6	0.8°	0.3°
N3	C4	C5	N4	179.8°	180.0°
N3	C4	N4	H42	0.0°	0.1°
N3	C4	N4	H41	180.0°	180.0°
N3	C4	C5	H5	179.2°	180.0°
C5'	O5'	P	OP1	141.9°	55.0°
C5'	O5'	P	SP2	83.1°	65.0°
C5'	O5'	P	OP3	29.9°	175.0°
O5'	C5'	H5'2	H5'1	119.0°	120.0°
O5'	C5'	C4'	H4'	51.0°	54.3°
O5'	P	OP1	SP2	124.3°	120.0°
O5'	P	OP1	OP3	108.1°	120.0°
O5'	P	SP2	OP3	108.6°	120.0°
P	O5'	C5'	H5'2	70.3°	60.0°
P	O5'	C5'	H5'1	49.0°	60.0°
O5'	P	SP2	HSP2	180.0°	60.0°
O5'	P	OP3	HOP3	111.3°	180.0°
C6	C5	C4	H5	180.0°	179.7°
C6	C5	C4	N4	179.4°	179.7°
C5	C4	N4	H42	179.8°	180.0°
C5	C4	N4	H41	0.2°	0.0°
C4	C5	C6	H6	179.8°	179.7°
C4	N4	H42	H41	180.0°	179.9°
N4	C4	C5	H5	0.5°	0.0°
OP1	P	SP2	OP3	127.2°	120.0°
OP1	P	SP2	HSP2	55.8°	180.0°
OP1	P	OP3	HOP3	0.0°	60.0°
SP2	P	OP3	HOP3	136.8°	60.0°
OP3	P	SP2	HSP2	71.4°	60.0°
H5'2	C5'	C4'	H4'	171.3°	174.3°
H5'1	C5'	C4'	H4'	69.3°	65.7°
H4'	C4'	C3'	H3'	97.9°	160.2°
H3'	C3'	O3'	H1	58.1°	56.3°
H3'	C3'	C2'	H2'1	98.5°	21.4°
H3'	C3'	C2'	H2'2	23.2°	143.9°
H2'1	C2'	C1'	H1'	17.8°	124.0°
H2'2	C2'	C1'	H1'	139.5°	1.3°
H5	C5	C6	H6	0.2°	0.0°

Release date:	2016-06-22
Definition date:	2016-04-28
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB
Derived from:	5JLW