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SummaryGeometryPCM/PTMRelated PDB entries

Y3T

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C24C23sing1.53Å1.53Å
C24N26sing1.47Å1.45Å
C28N26sing1.47Å1.45Å
C23C22sing1.53Å1.53Å
C27N26sing1.47Å1.45Å
C22C21sing1.51Å1.53Å
O25C21doub1.21Å1.19Å
F18C15sing1.35Å1.36Å
C16C15doub1.38Å1.38ÅAromatic
C16C17sing1.38Å1.39ÅAromatic
C21N01sing1.35Å1.46Å
C15C14sing1.39Å1.38ÅAromatic
C17C12doub1.39Å1.38ÅAromatic
C14CL19sing1.74Å1.78Å
C14C13doub1.38Å1.38ÅAromatic
C12C13sing1.39Å1.39ÅAromatic
C12N11sing1.40Å1.44Å
N11C02sing1.35Å1.45Å
N01C05sing1.40Å1.46Å
C04C05doub1.38Å1.39ÅAromatic
C04C03sing1.40Å1.39ÅAromatic
C05C06sing1.40Å1.39ÅAromatic
C02C03sing1.48Å1.53Å
C02O10doub1.22Å1.19Å
C03C08doub1.40Å1.39ÅAromatic
C06O09sing1.36Å1.40Å
C06C07doub1.39Å1.38ÅAromatic
O09C20sing1.43Å1.40Å
C08C07sing1.38Å1.38ÅAromatic
C04H1sing1.08Å1.08Å
C07H2sing1.08Å1.08Å
C13H3sing1.08Å1.08Å
C16H4sing1.08Å1.08Å
C17H5sing1.08Å1.08Å
C20H6sing1.09Å1.10Å
C20H7sing1.09Å1.10Å
C20H8sing1.09Å1.10Å
C22H9sing1.09Å1.10Å
C22H10sing1.09Å1.10Å
C24H11sing1.09Å1.10Å
C24H12sing1.09Å1.10Å
C27H13sing1.09Å1.10Å
C27H14sing1.09Å1.10Å
C27H15sing1.09Å1.10Å
C08H16sing1.08Å1.08Å
C23H17sing1.09Å1.10Å
C23H18sing1.09Å1.10Å
C28H19sing1.09Å1.10Å
C28H20sing1.09Å1.10Å
C28H21sing1.09Å1.10Å
N01H22sing0.97Å1.00Å
N11H23sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C23C24N26110.3°109.5°
C24C23C22112.2°109.5°
C23C24H11109.3°109.5°
C23C24H12109.3°109.5°
C24C23H17108.8°109.5°
C24C23H18108.8°109.5°
C24N26C28109.8°111.0°
C24N26C27109.6°111.0°
N26C24H11109.3°109.4°
N26C24H12109.3°109.5°
C28N26C27109.6°111.0°
N26C28H19109.5°109.5°
N26C28H20109.4°109.5°
N26C28H21109.5°109.4°
C23C22C21112.9°109.5°
C23C22H9108.6°109.5°
C23C22H10108.6°109.5°
C22C23H17108.8°109.4°
C22C23H18108.8°109.4°
N26C27H13109.5°109.4°
N26C27H14109.4°109.5°
N26C27H15109.4°109.4°
C22C21O25119.9°120.0°
C22C21N01117.5°120.0°
C21C22H9108.6°109.4°
C21C22H10108.6°109.4°
O25C21N01122.6°120.0°
F18C15C16120.2°120.0°
F18C15C14119.7°120.0°
C15C16C17120.1°120.1°
C16C15C14120.1°120.1°
C15C16H4120.0°119.9°
C16C17C12120.1°120.0°
C17C16H4119.9°120.0°
C16C17H5120.0°120.1°
C21N01C05127.5°120.0°
C21N01H22116.2°120.0°
C15C14CL19119.7°120.0°
C15C14C13119.8°120.1°
C17C12C13119.5°119.9°
C17C12N11119.7°120.1°
C12C17H5120.0°120.0°
CL19C14C13120.6°119.9°
C14C13C12120.5°119.9°
C14C13H3119.7°120.1°
C13C12N11120.8°120.0°
C12C13H3119.8°120.0°
C12N11C02121.3°120.0°
C12N11H23119.3°120.0°
N11C02C03121.5°120.0°
N11C02O10120.4°120.0°
C02N11H23119.3°120.0°
N01C05C04123.6°120.0°
N01C05C06116.6°120.0°
C05N01H22116.2°120.0°
C05C04C03119.6°119.8°
C04C05C06119.8°120.0°
C05C04H1120.2°120.1°
C04C03C02121.7°120.1°
C04C03C08120.1°119.9°
C03C04H1120.2°120.1°
C05C06O09119.3°119.9°
C05C06C07120.5°120.1°
C03C02O10118.1°120.0°
C02C03C08118.1°120.0°
C03C08C07120.3°120.0°
C03C08H16119.8°120.0°
O09C06C07120.2°120.0°
C06O09C20114.5°117.0°
C06C07C08119.7°120.2°
C06C07H2120.2°119.9°
O09C20H6109.5°109.5°
O09C20H7109.5°109.5°
O09C20H8109.5°109.5°
C08C07H2120.2°119.9°
C07C08H16119.8°120.0°
H6C20H7109.4°109.5°
H6C20H8109.4°109.5°
H7C20H8109.5°109.5°
H9C22H10109.5°109.5°
H11C24H12109.5°109.5°
H13C27H14109.5°109.5°
H13C27H15109.4°109.5°
H14C27H15109.5°109.5°
H17C23H18109.4°109.5°
H19C28H20109.5°109.5°
H19C28H21109.4°109.5°
H20C28H21109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C23C24N26H11120.1°120.0°
C23C24N26H12120.1°120.1°
C23C24N26C2869.9°66.1°
C24C23C22H17120.4°120.0°
C24C23C22H18120.4°120.0°
C23C24N26C27169.6°170.0°
C24C23C22C21147.7°180.0°
C24C23C22H927.2°60.1°
C24C23C22H1091.8°60.0°
C23C24H11H12119.6°120.0°
C24C23H17H18118.7°120.1°
C24N26C28C27120.5°124.0°
N26C24C23C2284.0°180.0°
N26C24H11H12119.6°120.0°
C24N26C27H13180.0°60.0°
C24N26C27H1460.0°180.0°
C24N26C27H1560.0°60.0°
N26C24C23H17155.6°60.0°
N26C24C23H1836.5°60.0°
C24N26C28H19180.0°60.0°
C24N26C28H2060.0°180.0°
C24N26C28H2160.0°60.0°
C28N26C24H1150.2°174.0°
C28N26C24H12169.9°54.0°
C28N26C27H1359.4°64.0°
C28N26C27H1460.6°56.0°
C28N26C27H15179.4°176.0°
N26C28H19H20120.0°120.0°
N26C28H19H21120.0°120.0°
N26C28H20H21120.0°120.0°
C23C22C21H9120.5°120.0°
C23C22C21H10120.5°120.0°
C23C22C21O2518.7°0.0°
C23C22C21N01161.6°180.0°
C23C22H9H10118.4°120.1°
C22C23C24H11155.9°60.0°
C22C23C24H1236.2°60.0°
C22C23H17H18118.8°120.0°
C27N26C24H1170.3°50.0°
C27N26C24H1249.5°70.0°
N26C27H13H14120.0°120.0°
N26C27H13H15120.0°119.9°
N26C27H14H15120.0°120.0°
C27N26C28H1959.5°176.0°
C27N26C28H20179.5°56.0°
C27N26C28H2160.5°64.0°
C22C21O25N01179.7°180.0°
C22C21N01C05179.8°175.5°
C21C22H9H10118.4°120.0°
C21C22C23H1791.9°60.0°
C21C22C23H1827.3°60.0°
C22C21N01H220.2°4.5°
O25C21N01C050.5°4.5°
O25C21C22H9139.2°120.0°
O25C21C22H10101.9°120.0°
O25C21N01H22179.5°175.5°
F18C15C16C14179.9°179.9°
F18C15C16C17179.9°179.7°
F18C15C14CL190.1°0.0°
F18C15C14C13179.9°180.0°
F18C15C16H40.1°0.0°
C15C16C17H4180.0°179.8°
C15C16C17C120.1°0.6°
C16C15C14CL19180.0°180.0°
C16C15C14C130.2°0.1°
C15C16C17H5179.9°180.0°
C17C16C15C140.0°0.3°
C16C17C12H5180.0°179.4°
C16C17C12C130.4°0.6°
C16C17C12N11179.7°179.8°
C21N01C05H22180.0°180.0°
C21N01C05C042.5°34.7°
C21N01C05C06177.1°145.3°
N01C21C22H941.1°60.0°
N01C21C22H1077.9°60.0°
C15C14CL19C13179.8°180.0°
C15C14C13C120.5°0.1°
C15C14C13H3179.5°180.0°
C14C15C16H4179.9°179.9°
C17C12C13C140.5°0.3°
C17C12C13N11179.3°179.6°
C17C12N11C02133.4°145.2°
C17C12C13H3179.5°179.7°
C12C17C16H4179.9°179.7°
C17C12N11H2346.6°34.8°
CL19C14C13C12179.7°180.0°
CL19C14C13H30.3°0.0°
C14C13C12H3180.0°180.0°
C14C13C12N11179.8°180.0°
C13C12N11C0247.3°35.2°
C13C12C17H5179.6°180.0°
C13C12N11H23132.7°144.9°
C12N11C02H23180.0°179.9°
C12N11C02C03179.3°175.4°
C12N11C02O100.1°4.4°
N11C12C13H30.2°0.1°
N11C12C17H50.3°0.4°
N11C02C03C0411.1°179.5°
N11C02C03O10179.3°179.8°
N11C02C03C08169.6°0.2°
N01C05C04C06179.6°180.0°
N01C05C04C03179.6°180.0°
N01C05C06O090.3°0.0°
N01C05C06C07179.7°180.0°
N01C05C04H10.5°0.0°
C05C04C03H1180.0°180.0°
C05C04C03C02179.4°180.0°
C05C04C03C080.1°0.3°
C04C05C06O09180.0°180.0°
C04C05C06C070.1°0.0°
C04C05N01H22177.5°145.3°
C03C04C05C060.1°0.0°
C04C03C02C08179.2°179.7°
C04C03C02O10168.1°0.3°
C04C03C08C070.0°0.6°
C04C03C08H16180.0°179.7°
C05C06O09C07180.0°179.9°
C05C06O09C20151.0°180.0°
C05C06C07C080.2°0.3°
C06C05C04H1179.9°180.0°
C05C06C07H2179.8°180.0°
C06C05N01H222.8°34.7°
C02C03C08C07179.3°179.7°
C02C03C04H10.6°0.0°
C02C03C08H160.7°0.1°
C03C02N11H230.7°4.5°
O10C02C03C0811.1°180.0°
O10C02N11H23179.9°175.7°
C03C08C07C060.1°0.6°
C03C08C07H16180.0°179.7°
C08C03C04H1179.9°179.7°
C03C08C07H2179.8°179.7°
O09C06C07C08179.8°179.7°
O09C06C07H20.2°0.0°
C06O09C20H6180.0°180.0°
C06O09C20H760.0°60.0°
C06O09C20H860.0°60.0°
C07C06O09C2029.0°0.0°
C06C07C08H2180.0°179.7°
C06C07C08H16179.8°179.7°
O09C20H6H7120.0°120.0°
O09C20H6H8120.0°120.0°
O09C20H7H8120.0°120.0°
H2C07C08H160.2°0.0°
H4C16C17H50.2°0.3°
H6C20H7H8120.0°120.0°
H9C22C23H17147.6°180.0°
H9C22C23H1893.2°60.0°
H10C22C23H1728.6°60.0°
H10C22C23H18147.8°180.0°
H11C24C23H1735.5°180.0°
H11C24C23H1883.7°59.9°
H12C24C23H1784.3°60.0°
H12C24C23H18156.6°179.9°
H13C27H14H15120.0°120.1°
H19C28H20H21119.9°120.1°

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PDB entries from 2026-03-25

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