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SummaryGeometryRelated PDB entries

XY5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CA7CB7sing1.53Å1.55Å
CA7CA2sing1.51Å1.54Å
CB7CB6sing1.51Å1.54Å
NA1NB1doub1.22Å1.43Å
NA1CA1sing1.33Å1.48Å
NB1CB1sing1.36Å1.46Å
CA2CA1doub1.39Å1.39ÅAromatic
CA2CA3sing1.39Å1.42ÅAromatic
CA1CA6sing1.42Å1.40ÅAromatic
CB6CB1doub1.39Å1.39ÅAromatic
CB6CB5sing1.38Å1.39ÅAromatic
CB1CB2sing1.39Å1.44ÅAromatic
CA3CA4doub1.38Å1.41ÅAromatic
CB5CB4doub1.38Å1.40ÅAromatic
CA6CA5doub1.38Å1.39ÅAromatic
CA4CA5sing1.39Å1.38ÅAromatic
CB2CB3doub1.39Å1.37ÅAromatic
CA5Nsing1.40Å1.46Å
CB4CB3sing1.39Å1.41ÅAromatic
CB3NB2sing1.40Å1.48Å
OCdoub1.21Å1.21Å
NB2CAsing1.46Å1.49Å
CCAsing1.51Å1.60Å
CAHA2sing1.09Å1.10Å
CAHA3sing1.09Å1.10Å
CB2HB21sing1.08Å1.08Å
NB2HB22sing0.97Å1.00Å
CA3HA31sing1.08Å1.08Å
CA4HA41sing1.08Å1.08Å
CA6HA61sing1.08Å1.08Å
CA7HA72sing1.09Å1.10Å
CA7HA71sing1.09Å1.10Å
CB4HB41sing1.08Å1.08Å
CB5HB51sing1.08Å1.08Å
CB7HB72sing1.09Å1.10Å
CB7HB71sing1.09Å1.10Å
NHsing0.97Å1.00Å
NH2sing0.97Å1.00Å
COXTsing1.34Å34.55Å
OXTHXTsing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CB7CA7CA2117.6°111.3°
CA7CB7CB6116.3°107.8°
CB7CA7HA72107.4°109.2°
CB7CA7HA71107.4°109.1°
CA7CB7HB72107.7°109.8°
CA7CB7HB71107.7°109.8°
CA7CA2CA1120.0°125.1°
CA7CA2CA3120.0°114.9°
CA2CA7HA72107.4°109.1°
CA2CA7HA71107.4°109.1°
CB7CB6CB1121.1°118.9°
CB7CB6CB5118.8°120.9°
CB6CB7HB72107.7°109.8°
CB6CB7HB71107.7°109.8°
NB1NA1CA1118.7°148.4°
NA1NB1CB1118.4°128.8°
NA1CA1CA2123.9°128.1°
NA1CA1CA6115.9°114.1°
NB1CB1CB6120.0°117.2°
NB1CB1CB2120.0°122.5°
CA1CA2CA3120.0°120.1°
CA2CA1CA6120.2°117.7°
CA2CA3CA4119.3°121.6°
CA2CA3HA31120.4°119.2°
CA1CA6CA5119.2°121.6°
CA1CA6HA61120.4°119.2°
CB1CB6CB5120.1°120.2°
CB6CB1CB2120.0°120.3°
CB6CB5CB4120.0°119.8°
CB6CB5HB51120.0°120.2°
CB1CB2CB3119.6°119.2°
CB1CB2HB21120.2°120.4°
CA3CA4CA5119.4°119.3°
CA4CA3HA31120.3°119.2°
CA3CA4HA41120.3°120.3°
CB5CB4CB3120.4°120.4°
CB5CB4HB41119.8°119.8°
CB4CB5HB51120.0°120.1°
CA6CA5CA4121.9°119.6°
CA6CA5N116.9°120.2°
CA5CA6HA61120.4°119.2°
CA4CA5N121.2°120.2°
CA5CA4HA41120.3°120.4°
CB2CB3CB4120.0°120.1°
CB2CB3NB2119.3°120.0°
CB3CB2HB21120.2°120.4°
CA5NH109.5°120.1°
CA5NH2109.4°120.0°
CB4CB3NB2120.8°119.9°
CB3CB4HB41119.8°119.7°
CB3NB2CA120.2°120.0°
CB3NB2HB22106.7°120.0°
OCCA121.1°120.0°
OCOXT103.4°120.0°
NB2CAC116.4°109.5°
NB2CAHA2107.7°109.4°
NB2CAHA3107.7°109.5°
CANB2HB22106.7°119.9°
CCAHA2107.7°109.4°
CCAHA3107.7°109.5°
CACOXT104.2°120.0°
HA2CAHA3109.5°109.5°
HA72CA7HA71109.4°109.1°
HB72CB7HB71109.5°109.8°
HNH2109.5°120.0°
COXTHXT90.0°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CB7CA7CA2HA72121.2°120.5°
CB7CA7CA2HA71121.2°120.5°
CA7CB7CB6HB72121.0°119.6°
CA7CB7CB6HB71121.0°119.6°
CB7CA7CA2CA167.6°21.7°
CB7CA7CA2CA3114.1°159.1°
CA7CB7CB6CB171.5°97.6°
CA7CB7CB6CB5106.9°81.7°
CB7CA7HA72HA71116.3°119.1°
CA7CB7HB72HB71116.9°120.8°
CA2CA7CB7CB62.7°97.1°
CA7CA2CA1NA10.8°2.6°
CA7CA2CA1CA3178.4°179.2°
CA7CA2CA1CA6178.9°178.3°
CA7CA2CA3CA4179.2°178.7°
CA7CA2CA3HA310.8°1.3°
CA2CA7HA72HA71116.3°119.0°
CA2CA7CB7HB72123.7°143.2°
CA2CA7CB7HB71118.3°22.4°
CB7CB6CB1NB11.8°1.9°
CB7CB6CB1CB5178.3°179.3°
CB7CB6CB1CB2179.6°178.6°
CB7CB6CB5CB4179.5°178.7°
CB6CB7CA7HA72123.9°23.4°
CB6CB7CA7HA71118.5°142.4°
CB7CB6CB5HB510.5°1.3°
CB6CB7HB72HB71116.9°120.8°
NB1NA1CA1CA269.4°43.5°
NB1NA1CA1CA6110.9°137.4°
NA1NB1CB1CB676.9°47.9°
NA1NB1CB1CB2104.6°132.6°
CA1NA1NB1CB14.8°10.8°
NA1CA1CA2CA6179.7°179.1°
NA1CA1CA2CA3179.1°178.2°
NA1CA1CA6CA5179.8°178.7°
NA1CA1CA6HA610.3°1.3°
NB1CB1CB6CB2178.5°179.5°
NB1CB1CB6CB5179.8°178.8°
NB1CB1CB2CB3179.5°179.1°
NB1CB1CB2HB210.5°0.9°
CA1CA2CA3CA40.8°0.6°
CA2CA1CA6CA50.6°0.5°
CA1CA2CA3HA31179.2°179.4°
CA2CA1CA6HA61179.4°179.5°
CA1CA2CA7HA7253.6°98.9°
CA1CA2CA7HA71171.3°142.1°
CA3CA2CA1CA60.5°0.8°
CA2CA3CA4HA31180.0°180.0°
CA2CA3CA4CA50.0°0.0°
CA2CA3CA4HA41180.0°180.0°
CA3CA2CA7HA72124.7°80.4°
CA3CA2CA7HA717.1°38.6°
CA1CA6CA5HA61180.0°180.0°
CA1CA6CA5CA41.4°0.0°
CA1CA6CA5N179.8°180.0°
CB1CB6CB5CB41.2°0.6°
CB6CB1CB2CB31.0°0.4°
CB6CB1CB2HB21179.0°179.6°
CB1CB6CB5HB51178.8°179.4°
CB1CB6CB7HB72167.6°142.8°
CB1CB6CB7HB7149.5°21.9°
CB5CB6CB1CB21.3°0.7°
CB6CB5CB4HB51180.0°180.0°
CB6CB5CB4CB30.7°0.1°
CB6CB5CB4HB41179.3°180.0°
CB5CB6CB7HB7214.1°38.0°
CB5CB6CB7HB71132.1°158.8°
CB1CB2CB3HB21180.0°180.0°
CB1CB2CB3CB40.5°0.1°
CB1CB2CB3NB2179.8°179.9°
CA3CA4CA5CA61.1°0.3°
CA3CA4CA5HA41180.0°179.9°
CA3CA4CA5N179.4°179.7°
CB5CB4CB3CB20.3°0.2°
CB5CB4CB3HB41180.0°179.9°
CB5CB4CB3NB2179.9°179.7°
CA6CA5CA4N178.3°180.0°
CA6CA5CA4HA41178.9°179.6°
CA6CA5NH180.0°180.0°
CA6CA5NH260.0°0.0°
CA5CA4CA3HA31179.9°180.0°
CA4CA5CA6HA61178.6°179.9°
CA4CA5NH1.6°0.0°
CA4CA5NH2121.6°180.0°
CB2CB3CB4NB2179.8°179.9°
CB2CB3NB2CA38.1°180.0°
CB2CB3NB2HB22159.6°0.0°
CB2CB3CB4HB41179.7°179.7°
NCA5CA4HA410.6°0.3°
NCA5CA6HA610.2°0.0°
CA5NHH2120.0°180.0°
CB4CB3NB2CA142.1°0.0°
CB4CB3CB2HB21179.5°179.9°
CB4CB3NB2HB2220.6°180.0°
CB3CB4CB5HB51179.3°179.9°
CB3NB2CAHB22121.5°180.0°
CB3NB2CAC103.2°180.0°
CB3NB2CAHA217.8°60.0°
CB3NB2CAHA3135.8°60.0°
NB2CB3CB2HB210.2°0.1°
NB2CB3CB4HB410.1°0.4°
OCCANB278.1°0.0°
OCCAOXT115.5°180.0°
OCCAHA242.9°120.0°
OCCAHA3160.9°120.0°
OCOXTHXT90.0°0.0°
NB2CACHA2121.0°119.9°
NB2CACHA3121.0°120.1°
NB2CAHA2HA3116.8°120.0°
NB2CACOXT166.4°180.0°
CCAHA2HA3116.8°120.0°
CCANB2HB22135.2°0.0°
CACOXTHXT90.0°179.9°
HA2CANB2HB22103.7°120.0°
HA2CACOXT72.6°60.1°
HA3CANB2HB2214.2°120.0°
HA3CACOXT45.4°59.9°
HA31CA3CA4HA410.1°0.0°
HA72CA7CB7HB72115.1°96.3°
HA72CA7CB7HB712.9°142.9°
HA71CA7CB7HB722.5°22.8°
HA71CA7CB7HB71120.6°98.0°
HB41CB4CB5HB510.7°0.0°

225946

PDB entries from 2024-10-09

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