Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

W5Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CE2CZdoub1.38Å1.40ÅAromatic
CE2CD2sing1.38Å1.40ÅAromatic
CZCE1sing1.38Å1.40ÅAromatic
CD2CGdoub1.38Å1.40ÅAromatic
CE1CD1doub1.38Å1.39ÅAromatic
CGCD1sing1.38Å1.41ÅAromatic
CGCBsing1.51Å1.51Å
CACBsing1.53Å1.53Å
CANsing1.47Å1.44Å
CACsing1.51Å1.50Å
NATCsing1.35Å1.32Å
NATSBIsing1.65Å1.60Å
COdoub1.21Å1.22Å
OAESBIdoub1.42Å1.43Å
SBIOADdoub1.42Å1.43Å
SBIO5'sing1.52Å1.56Å
O5'C5'sing1.43Å1.44Å
C5'C4'sing1.53Å1.53Å
O3'C3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.52Å
C3'C2'sing1.55Å1.51Å
C4'O4'sing1.44Å1.44Å
O4'C1'sing1.44Å1.44Å
C2'O2'sing1.43Å1.43Å
C2'C1'sing1.55Å1.51Å
C8N7doub1.30Å1.35ÅAromatic
C8N9sing1.36Å1.34ÅAromatic
N7C5sing1.35Å1.34ÅAromatic
C1'N9sing1.46Å1.49Å
N9C4sing1.37Å1.33ÅAromatic
C5C4doub1.40Å1.47ÅAromatic
C5C6sing1.41Å1.47ÅAromatic
C4N3sing1.33Å1.34ÅAromatic
N6C6sing1.38Å1.37Å
C6N1doub1.33Å1.35ÅAromatic
N3C2doub1.32Å1.33ÅAromatic
N1C2sing1.32Å1.35ÅAromatic
CD1H1sing1.08Å1.08Å
CE1H2sing1.08Å1.08Å
CZH3sing1.08Å1.08Å
CE2H4sing1.08Å1.08Å
CD2H5sing1.08Å1.08Å
CBH6sing1.09Å1.10Å
CBH7sing1.09Å1.10Å
CAH8sing1.09Å1.10Å
NH9sing1.01Å1.00Å
NH10sing1.01Å1.00Å
NATH12sing0.97Å1.00Å
C5'H13sing1.09Å1.10Å
C5'H14sing1.09Å1.10Å
C4'H15sing1.09Å1.10Å
C3'H16sing1.09Å1.10Å
O3'H17sing0.97Å0.95Å
C2'H18sing1.09Å1.10Å
O2'H19sing0.97Å0.95Å
C1'H20sing1.09Å1.10Å
C8H21sing1.08Å1.08Å
C2H22sing1.08Å1.08Å
N6H23sing0.97Å1.00Å
N6H24sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CZCE2CD2119.3°120.0°
CE2CZCE1119.8°120.0°
CE2CZH3120.1°120.1°
CZCE2H4120.3°120.0°
CE2CD2CG121.0°120.0°
CD2CE2H4120.3°120.0°
CE2CD2H5119.5°120.0°
CZCE1CD1121.0°120.0°
CZCE1H2119.5°120.0°
CE1CZH3120.1°120.0°
CD2CGCD1119.7°120.0°
CD2CGCB120.8°120.0°
CGCD2H5119.5°120.0°
CE1CD1CG119.2°120.0°
CE1CD1H1120.4°120.0°
CD1CE1H2119.5°120.0°
CD1CGCB119.4°120.0°
CGCD1H1120.4°120.0°
CGCBCA113.4°109.5°
CGCBH6108.5°109.5°
CGCBH7108.5°109.5°
CBCAN112.3°109.5°
CBCAC111.2°109.5°
CACBH6108.5°109.5°
CACBH7108.5°109.4°
CBCAH8108.1°109.4°
NCAC107.4°109.5°
NCAH8109.3°109.5°
CANH9109.5°111.0°
CANH10109.5°111.0°
CACNAT115.3°120.1°
CACO122.1°120.0°
CCAH8108.5°109.5°
CNATSBI120.6°120.0°
NATCO122.5°120.0°
CNATH12119.7°119.9°
NATSBIOAE107.0°106.4°
NATSBIOAD112.1°106.4°
NATSBIO5'111.6°107.2°
SBINATH12119.7°120.0°
OAESBIOAD110.9°123.1°
OAESBIO5'107.8°106.4°
OADSBIO5'107.4°106.4°
SBIO5'C5'119.0°114.0°
O5'C5'C4'110.6°109.5°
O5'C5'H13109.2°109.5°
O5'C5'H14109.2°109.4°
C5'C4'C3'111.4°109.9°
C5'C4'O4'114.3°109.9°
C4'C5'H13109.2°109.5°
C4'C5'H14109.2°109.5°
C5'C4'H15108.4°109.9°
O3'C3'C4'110.2°110.5°
O3'C3'C2'112.1°110.5°
O3'C3'H16111.7°110.6°
C3'O3'H17109.5°114.0°
C4'C3'C2'101.8°104.2°
C3'C4'O4'104.3°107.3°
C3'C4'H15108.6°110.0°
C4'C3'H16110.2°110.5°
C3'C2'O2'107.4°110.9°
C3'C2'C1'104.4°102.1°
C2'C3'H16110.4°110.5°
C3'C2'H18112.4°110.9°
C4'O4'C1'110.7°107.0°
O4'C4'H15109.7°109.9°
O4'C1'C2'105.4°103.5°
O4'C1'N9110.0°110.7°
O4'C1'H20110.2°110.6°
O2'C2'C1'105.9°110.9°
O2'C2'H18113.8°110.8°
C2'O2'H19109.5°113.9°
C2'C1'N9112.5°110.6°
C1'C2'H18112.4°110.9°
C2'C1'H20109.2°110.6°
N7C8N9111.4°109.9°
C8N7C5107.6°109.4°
N7C8H21124.3°125.1°
C8N9C1'125.2°126.2°
C8N9C4108.1°107.5°
N9C8H21124.3°125.0°
N7C5C4106.5°107.1°
N7C5C6135.6°134.6°
C1'N9C4126.7°126.3°
N9C1'H20109.5°110.7°
N9C4C5106.5°106.0°
N9C4N3134.4°134.9°
C4C5C6117.9°118.2°
C5C4N3119.1°119.0°
C5C6N6121.9°120.8°
C5C6N1116.5°118.4°
C4N3C2120.5°120.6°
N6C6N1121.6°120.8°
C6N6H23109.5°120.0°
C6N6H24109.5°119.9°
C6N1C2122.4°121.2°
N3C2N1123.6°122.5°
N3C2H22118.2°118.7°
N1C2H22118.2°118.8°
H6CBH7109.4°109.5°
H9NH10109.4°111.0°
H13C5'H14109.4°109.5°
H23N6H24109.5°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CZCE2CD2H4180.0°179.9°
CE2CZCE1H3180.0°180.0°
CZCE2CD2CG0.1°0.3°
CE2CZCE1CD10.4°0.1°
CE2CZCE1H2179.6°180.0°
CZCE2CD2H5179.9°179.9°
CD2CE2CZCE10.3°0.0°
CE2CD2CGH5180.0°179.8°
CE2CD2CGCD10.4°0.6°
CE2CD2CGCB179.6°180.0°
CD2CE2CZH3179.7°179.9°
CZCE1CD1H2180.0°179.9°
CZCE1CD1CG0.1°0.3°
CZCE1CD1H1179.8°179.9°
CE1CZCE2H4179.7°179.9°
CD2CGCD1CE10.3°0.6°
CD2CGCD1CB179.2°179.5°
CD2CGCBCA83.5°90.0°
CD2CGCD1H1179.7°179.7°
CGCD2CE2H4179.9°179.8°
CD2CGCBH637.1°150.0°
CD2CGCBH7155.9°30.0°
CE1CD1CGH1180.0°179.7°
CE1CD1CGCB179.5°180.0°
CD1CE1CZH3179.6°179.9°
CD1CGCBCA97.3°90.6°
CGCD1CE1H2179.9°179.8°
CD1CGCD2H5179.6°179.7°
CD1CGCBH6142.1°29.5°
CD1CGCBH723.3°149.5°
CGCBCAH6120.6°120.0°
CGCBCAH7120.6°120.0°
CGCBCAN68.4°64.9°
CGCBCAC171.2°175.0°
CBCGCD1H10.5°0.2°
CBCGCD2H50.4°0.2°
CGCBH6H7118.2°120.0°
CGCBCAH852.2°55.0°
CBCANC122.5°120.1°
CBCANH8120.0°119.9°
CBCACH8118.8°119.9°
CBCACNAT72.9°80.0°
CBCACO109.4°100.0°
CACBH6H7118.2°119.9°
CBCANH9180.0°176.0°
CBCANH1060.0°60.0°
NCACH8118.0°120.0°
NCACNAT163.9°160.0°
NCACO13.8°20.0°
NCACBH6171.0°175.0°
NCACBH752.2°55.0°
CANH9H10120.0°123.9°
CACNATO177.8°180.0°
CACNATSBI170.9°180.0°
CCACBH650.6°55.0°
CCACBH768.1°65.0°
CCANH957.5°63.9°
CCANH1062.5°60.0°
CACNATH129.1°0.0°
CNATSBIH12180.0°180.0°
CNATSBIOAE167.7°48.5°
CNATSBIOAD70.5°178.5°
CNATSBIO5'49.9°65.0°
NATCCAH845.9°40.0°
SBINATCO11.3°0.0°
NATSBIOAEOAD122.5°123.0°
NATSBIOAEO5'120.2°114.1°
NATSBIOADO5'122.8°114.1°
NATSBIO5'C5'54.9°75.0°
OCCAH8131.9°140.0°
OCNATH12168.7°180.0°
OAESBIOADO5'117.6°122.9°
OAESBIO5'C5'62.4°171.4°
OAESBINATH1212.3°131.5°
OADSBIO5'C5'178.0°38.6°
OADSBINATH12109.5°1.5°
SBIO5'C5'C4'140.8°180.0°
O5'SBINATH12130.1°115.0°
SBIO5'C5'H1320.6°60.0°
SBIO5'C5'H1499.0°60.0°
O5'C5'C4'H13120.2°120.0°
O5'C5'C4'H14120.2°120.0°
O5'C5'C4'C3'66.4°175.7°
O5'C5'C4'O4'51.4°66.5°
O5'C5'H13H14119.5°120.0°
O5'C5'C4'H15174.1°54.6°
C5'C4'C3'O3'82.2°119.9°
C5'C4'C3'O4'123.8°119.4°
C5'C4'C3'H15119.4°121.1°
C5'C4'C3'C2'158.7°121.4°
C5'C4'O4'H15122.0°121.1°
C5'C4'O4'C1'144.6°145.9°
C4'C5'H13H14119.4°120.0°
C5'C4'C3'H1641.5°2.8°
O3'C3'C4'C2'119.2°118.7°
O3'C3'C4'H16123.7°122.7°
O3'C3'C2'H16125.2°122.7°
O3'C3'C4'O4'154.1°120.7°
O3'C3'C2'O2'40.2°20.4°
O3'C3'C2'C1'152.3°97.8°
O3'C3'C4'H1537.2°1.2°
O3'C3'C2'H1885.7°144.0°
C4'C3'C2'H16117.1°118.7°
C3'C4'O4'H15116.1°119.6°
C3'C4'O4'C1'22.7°26.5°
C4'C3'C2'O2'77.6°139.0°
C4'C3'C2'C1'34.5°20.9°
C3'C4'C5'H1353.8°64.3°
C3'C4'C5'H14173.4°55.8°
C4'C3'O3'H17180.0°179.9°
C4'C3'C2'H18156.5°97.3°
C2'C3'C4'O4'34.9°2.0°
C3'C2'C1'O4'21.7°37.0°
C3'C2'O2'C1'111.1°112.7°
C3'C2'O2'H18125.1°123.7°
C3'C2'C1'H18122.0°118.2°
C3'C2'C1'N998.1°155.6°
C2'C3'C4'H1581.9°117.5°
C2'C3'O3'H1767.3°65.3°
C3'C2'O2'H19180.0°61.5°
C3'C2'C1'H20140.1°81.5°
C4'O4'C1'C2'0.6°40.1°
C4'O4'C1'N9122.1°158.6°
O4'C4'C5'H13171.6°53.5°
O4'C4'C5'H1468.8°173.5°
O4'C4'C3'H1682.2°116.6°
C4'O4'C1'H20117.0°78.4°
O4'C1'C2'O2'91.5°155.2°
O4'C1'C2'N9119.9°118.6°
O4'C1'C2'H20118.4°118.5°
O4'C1'N9C842.4°23.9°
O4'C1'N9H20121.2°123.0°
O4'C1'N9C4136.0°156.4°
C1'O4'C4'H1593.4°93.0°
O4'C1'C2'H18143.8°81.2°
O2'C2'C1'H18124.7°123.6°
O2'C2'C1'N9148.6°86.3°
O2'C2'C3'H16165.4°102.3°
O2'C2'C1'H2026.9°36.7°
C2'C1'N9C874.8°90.2°
C2'C1'N9H20121.6°122.9°
C2'C1'N9C4106.8°89.5°
C1'C2'C3'H1682.5°139.5°
C1'C2'O2'H1968.9°174.1°
N7C8N9H21180.0°180.0°
N7C8N9C1'178.7°180.0°
N7C8N9C40.0°0.2°
C8N7C5C40.4°0.3°
C8N7C5C6179.9°180.0°
N9C8N7C50.3°0.0°
C8N9C1'C4178.5°179.7°
C8N9C4C50.2°0.4°
C8N9C4N3179.9°179.7°
C8N9C1'H20163.7°146.8°
N7C5C4N90.3°0.4°
N7C5C4C6179.8°179.8°
N7C5C4N3179.7°179.7°
N7C5C6N60.5°0.1°
N7C5C6N1179.2°179.3°
C5N7C8H21179.8°179.9°
C1'N9C4C5178.9°179.9°
C1'N9C4N31.2°0.0°
N9C1'C2'H1823.9°37.4°
C1'N9C8H211.3°0.1°
N9C4C5N3180.0°179.9°
N9C4C5C6179.9°179.8°
N9C4N3C2180.0°179.9°
C4N9C1'H2014.8°33.5°
C4N9C8H21180.0°179.8°
C4C5C6N6179.2°179.8°
C4C5C6N10.5°0.4°
C5C4N3C20.0°0.2°
C6C5C4N30.1°0.1°
C5C6N6N1178.7°179.3°
C5C6N1C20.9°0.6°
C5C6N6H23178.6°0.0°
C5C6N6H2458.6°180.0°
C4N3C2N10.4°0.0°
C4N3C2H22179.6°180.0°
N6C6N1C2179.6°179.9°
C6N6H23H24120.0°180.0°
C6N1C2N30.9°0.3°
C6N1C2H22179.1°179.6°
N1C6N6H230.0°179.3°
N1C6N6H24120.0°0.7°
N3C2N1H22180.0°180.0°
H1CD1CE1H20.1°0.0°
H2CE1CZH30.4°0.0°
H3CZCE2H40.3°0.0°
H4CE2CD2H50.1°0.0°
H6CBCAH868.4°65.0°
H7CBCAH8172.8°175.0°
H8CANH960.0°56.1°
H8CANH10180.0°180.0°
H13C5'C4'H1565.7°174.6°
H14C5'C4'H1553.9°65.4°
H15C4'C3'H16160.9°123.9°
H16C3'O3'H1757.1°57.3°
H16C3'C2'H1839.5°21.3°
H18C2'O2'H1954.9°62.2°
H18C2'C1'H2097.8°160.3°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon