Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

VYC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N3C29trip1.14Å1.14Å
C29C26sing1.43Å1.45Å
C2C1sing1.53Å1.50Å
C2N1sing1.47Å1.49Å
C26C25doub1.40Å1.40ÅAromatic
C26C27sing1.40Å1.40ÅAromatic
C1O1sing1.43Å1.42Å
C25C24sing1.38Å1.39ÅAromatic
N1C3sing1.47Å1.50Å
C27N2doub1.32Å1.34ÅAromatic
C3C4sing1.51Å1.50Å
C24C23sing1.51Å1.50Å
C24C28doub1.38Å1.39ÅAromatic
C23O3sing1.43Å1.44Å
N2C28sing1.32Å1.34ÅAromatic
C4C5doub1.38Å1.40ÅAromatic
C4C22sing1.39Å1.40ÅAromatic
O3C22sing1.36Å1.38Å
C5C6sing1.38Å1.39ÅAromatic
C22C21doub1.39Å1.39ÅAromatic
C6C7doub1.39Å1.38ÅAromatic
C21C7sing1.39Å1.39ÅAromatic
C7O2sing1.36Å1.36Å
O2C8sing1.43Å1.44Å
C8C9sing1.51Å1.51Å
C10C9doub1.38Å1.39ÅAromatic
C10C11sing1.38Å1.38ÅAromatic
C9C14sing1.38Å1.40ÅAromatic
C11C12doub1.38Å1.39ÅAromatic
C14CL1sing1.74Å1.75Å
C14C13doub1.39Å1.40ÅAromatic
C12C13sing1.39Å1.39ÅAromatic
C13C15sing1.48Å1.49Å
C15C20doub1.39Å1.40ÅAromatic
C15C16sing1.40Å1.39ÅAromatic
C20C19sing1.38Å1.39ÅAromatic
F1C16sing1.35Å1.36Å
C16C17doub1.38Å1.38ÅAromatic
C19C18doub1.38Å1.38ÅAromatic
C17C18sing1.38Å1.38ÅAromatic
C17H1sing1.08Å1.08Å
C18H2sing1.08Å1.08Å
C19H3sing1.08Å1.08Å
C20H4sing1.08Å1.08Å
C21H5sing1.08Å1.08Å
C23H6sing1.09Å1.10Å
C23H7sing1.09Å1.10Å
C25H8sing1.08Å1.08Å
C27H9sing1.08Å1.08Å
C28H10sing1.08Å1.08Å
O1H11sing0.97Å0.95Å
C1H12sing1.09Å1.10Å
C1H13sing1.09Å1.10Å
C2H14sing1.09Å1.10Å
C2H15sing1.09Å1.10Å
C3H16sing1.09Å1.10Å
C5H17sing1.08Å1.08Å
C6H18sing1.08Å1.08Å
C8H19sing1.09Å1.10Å
C8H20sing1.09Å1.10Å
C10H21sing1.08Å1.08Å
C11H22sing1.08Å1.08Å
C12H23sing1.08Å1.08Å
N1H24sing1.01Å1.00Å
C3H25sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N3C29C26178.2°180.0°
C29C26C25121.7°120.6°
C29C26C27120.5°120.5°
C1C2N1111.1°109.4°
C2C1O1112.0°109.5°
C2C1H12108.8°109.5°
C2C1H13108.8°109.5°
C1C2H14109.0°109.4°
C1C2H15109.0°109.4°
C2N1C3115.1°111.0°
N1C2H14109.1°109.5°
N1C2H15109.1°109.5°
C2N1H24108.0°111.0°
C25C26C27117.8°118.9°
C26C25C24120.4°118.3°
C26C25H8119.8°120.9°
C26C27N2122.5°120.5°
C26C27H9118.7°119.7°
C1O1H11109.5°114.0°
O1C1H12108.9°109.5°
O1C1H13108.9°109.5°
C25C24C23121.1°120.4°
C25C24C28117.0°119.3°
C24C25H8119.8°120.8°
N1C3C4115.3°109.5°
N1C3H16108.0°109.5°
C3N1H24108.0°111.0°
N1C3H25108.0°109.5°
C27N2C28118.0°121.9°
N2C27H9118.7°119.7°
C3C4C5119.9°120.0°
C3C4C22122.5°120.0°
C4C3H16108.0°109.5°
C4C3H25108.0°109.4°
C23C24C28121.9°120.3°
C24C23O3109.5°109.4°
C24C23H6109.4°109.4°
C24C23H7109.5°109.5°
C24C28N2124.3°121.0°
C24C28H10117.9°119.5°
C23O3C22119.9°117.0°
O3C23H6109.5°109.5°
O3C23H7109.5°109.5°
N2C28H10117.9°119.5°
C5C4C22117.6°120.1°
C4C5C6121.5°120.1°
C4C5H17119.2°119.9°
C4C22O3117.1°120.1°
C4C22C21121.3°119.9°
O3C22C21121.6°120.0°
C5C6C7119.6°120.1°
C6C5H17119.3°120.0°
C5C6H18120.2°119.9°
C22C21C7119.5°119.9°
C22C21H5120.2°120.1°
C6C7C21120.5°119.9°
C6C7O2119.1°120.0°
C7C6H18120.2°120.0°
C21C7O2120.4°120.0°
C7C21H5120.3°120.0°
C7O2C8117.1°117.0°
O2C8C9114.1°109.5°
O2C8H19108.3°109.5°
O2C8H20108.3°109.4°
C8C9C10121.8°120.0°
C8C9C14120.1°120.0°
C9C8H19108.3°109.5°
C9C8H20108.3°109.5°
C9C10C11121.2°120.3°
C10C9C14118.1°120.1°
C9C10H21119.4°119.9°
C10C11C12119.6°120.1°
C11C10H21119.4°119.8°
C10C11H22120.2°119.9°
C9C14CL1119.2°120.1°
C9C14C13121.8°119.9°
C11C12C13121.2°119.9°
C12C11H22120.2°119.9°
C11C12H23119.4°120.1°
CL1C14C13119.0°120.0°
C14C13C12118.1°119.7°
C14C13C15121.3°120.1°
C12C13C15120.6°120.2°
C13C12H23119.4°120.0°
C13C15C20120.3°120.2°
C13C15C16123.9°120.1°
C20C15C16115.7°119.7°
C15C20C19121.5°119.9°
C15C20H4119.3°120.1°
C15C16F1118.9°120.1°
C15C16C17123.7°119.8°
C20C19C18120.2°120.2°
C20C19H3119.9°119.9°
C19C20H4119.3°120.0°
F1C16C17117.4°120.0°
C16C17C18118.5°120.1°
C16C17H1120.7°120.0°
C19C18C17120.3°120.2°
C19C18H2119.8°119.9°
C18C19H3119.9°119.9°
C18C17H1120.7°120.0°
C17C18H2119.9°119.8°
H6C23H7109.4°109.5°
H12C1H13109.5°109.5°
H14C2H15109.5°109.5°
H16C3H25109.4°109.5°
H19C8H20109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N3C29C26C25118.3°40.1°
N3C29C26C2761.6°139.9°
C29C26C25C27179.9°180.0°
C29C26C25C24179.7°180.0°
C29C26C27N2179.9°179.9°
C29C26C25H80.3°0.0°
C29C26C27H90.1°0.0°
C1C2N1H14120.2°120.0°
C1C2N1H15120.2°120.0°
C2C1O1H12120.4°120.0°
C2C1O1H13120.3°120.0°
C1C2N1C393.9°180.0°
C2C1O1H11180.0°180.0°
C2C1H12H13118.8°120.0°
C1C2H14H15119.2°120.0°
C1C2N1H24145.2°56.1°
N1C2C1O161.9°65.0°
C2N1C3H24120.8°123.9°
C2N1C3C4174.2°180.0°
N1C2C1H12177.7°55.0°
N1C2C1H1358.4°175.0°
N1C2H14H15119.3°120.1°
C2N1C3H1653.3°60.0°
C2N1C3H2564.9°60.0°
C26C25C24H8180.0°179.9°
C25C26C27N20.0°0.1°
C26C25C24C23179.9°180.0°
C26C25C24C280.3°0.2°
C25C26C27H9180.0°180.0°
C27C26C25C240.2°0.0°
C26C27N2H9180.0°179.9°
C26C27N2C280.2°0.4°
C27C26C25H8179.8°180.0°
O1C1H12H13118.9°120.0°
O1C1C2H14177.8°175.0°
O1C1C2H1558.3°55.0°
C25C24C23C28179.6°179.8°
C25C24C23O3134.5°89.7°
C25C24C28N20.2°0.5°
C25C24C23H614.5°30.2°
C25C24C23H7105.5°150.3°
C25C24C28H10179.8°179.7°
N1C3C4H16120.9°120.0°
N1C3C4H25120.9°120.0°
N1C3C4C5168.9°100.0°
N1C3C4C2211.7°80.0°
C3N1C2H1426.3°60.0°
C3N1C2H15145.8°60.0°
N1C3H16H25117.3°120.1°
C27N2C28C240.0°0.6°
C27N2C28H10180.0°179.7°
C3C4C5C22179.4°180.0°
C3C4C22O31.2°0.0°
C3C4C5C6179.7°180.0°
C3C4C22C21179.7°180.0°
C4C3H16H25117.3°120.0°
C3C4C5H170.3°0.1°
C4C3N1H2465.0°56.1°
C24C23O3H6120.0°119.9°
C24C23O3H7120.0°120.0°
C23C24C28N2179.8°179.7°
C24C23O3C22170.6°180.0°
C24C23H6H7120.0°120.0°
C23C24C25H80.1°0.1°
C23C24C28H100.2°0.0°
C28C24C23O345.9°90.0°
C24C28N2H10180.0°179.8°
C28C24C23H6165.9°150.0°
C28C24C23H774.1°30.0°
C28C24C25H8179.6°179.8°
C23O3C22C4134.0°180.0°
C23O3C22C2147.5°0.0°
O3C23H6H7120.0°120.1°
C28N2C27H9179.9°179.8°
C5C4C22O3179.3°180.0°
C4C5C6H17180.0°179.9°
C5C4C22C210.8°0.0°
C4C5C6C70.0°0.1°
C5C4C3H1648.0°140.0°
C4C5C6H18180.0°180.0°
C5C4C3H2570.3°20.0°
C4C22O3C21178.5°180.0°
C22C4C5C60.3°0.0°
C4C22C21C71.1°0.0°
C4C22C21H5178.9°179.7°
C22C4C3H16132.6°40.0°
C22C4C5H17179.7°179.9°
C22C4C3H25109.1°160.0°
O3C22C21C7179.5°180.0°
O3C22C21H50.5°0.3°
C22O3C23H669.4°60.1°
C22O3C23H750.6°60.0°
C5C6C7H18180.0°180.0°
C5C6C7C210.2°0.1°
C5C6C7O2179.0°179.7°
C22C21C7C60.7°0.0°
C22C21C7H5180.0°179.7°
C22C21C7O2179.5°179.7°
C6C7C21O2178.8°179.7°
C6C7O2C8119.2°0.3°
C6C7C21H5179.3°179.7°
C7C6C5H17180.0°180.0°
C21C7O2C859.6°180.0°
C21C7C6H18179.8°180.0°
C7O2C8C9139.9°180.0°
O2C7C21H50.5°0.0°
O2C7C6H181.0°0.3°
C7O2C8H1999.4°60.0°
C7O2C8H2019.3°60.0°
O2C8C9H19120.7°120.1°
O2C8C9H20120.7°119.9°
O2C8C9C1013.9°0.3°
O2C8C9C14166.5°180.0°
O2C8H19H20117.9°120.0°
C8C9C10C14179.6°179.6°
C8C9C10C11179.7°179.9°
C8C9C14CL10.4°0.1°
C8C9C14C13179.8°179.8°
C9C8H19H20117.9°120.0°
C8C9C10H210.3°0.0°
C9C10C11H21180.0°180.0°
C9C10C11C120.1°0.0°
C10C9C14CL1180.0°179.8°
C10C9C14C130.2°0.6°
C10C9C8H19106.7°119.7°
C10C9C8H20134.6°120.3°
C9C10C11H22179.9°179.9°
C11C10C9C140.1°0.3°
C10C11C12H22180.0°180.0°
C10C11C12C130.1°0.0°
C10C11C12H23179.9°180.0°
C9C14CL1C13179.8°179.7°
C9C14C13C120.3°0.6°
C9C14C13C15179.9°179.7°
C14C9C8H1972.9°59.9°
C14C9C8H2045.8°60.1°
C14C9C10H21179.9°179.7°
C11C12C13C140.2°0.3°
C11C12C13H23180.0°180.0°
C11C12C13C15179.9°180.0°
C12C11C10H21180.0°180.0°
CL1C14C13C12179.9°179.8°
CL1C14C13C150.1°0.0°
C14C13C12C15179.9°179.7°
C14C13C15C2058.2°114.7°
C14C13C15C16121.1°65.5°
C14C13C12H23179.8°179.7°
C12C13C15C20121.9°65.0°
C12C13C15C1658.8°114.7°
C13C12C11H22179.9°180.0°
C13C15C20C16179.4°179.7°
C13C15C20C19179.4°179.7°
C13C15C16F10.7°0.3°
C13C15C16C17179.5°179.7°
C13C15C20H40.6°0.3°
C15C13C12H230.1°0.0°
C15C20C19H4180.0°180.0°
C20C15C16F1180.0°179.9°
C20C15C16C170.2°0.0°
C15C20C19C180.1°0.0°
C15C20C19H3179.9°179.9°
C16C15C20C190.0°0.0°
C15C16F1C17179.8°179.9°
C15C16C17C180.3°0.0°
C15C16C17H1179.7°180.0°
C16C15C20H4180.0°180.0°
C20C19C18H3180.0°180.0°
C20C19C18C170.0°0.1°
C20C19C18H2180.0°180.0°
F1C16C17C18179.9°180.0°
F1C16C17H10.1°0.0°
C16C17C18C190.2°0.1°
C16C17C18H1180.0°180.0°
C16C17C18H2179.8°180.0°
C19C18C17H2180.0°179.9°
C19C18C17H1179.8°180.0°
C18C19C20H4179.9°179.9°
C17C18C19H3180.0°179.9°
H1C17C18H20.2°0.0°
H2C18C19H30.0°0.0°
H3C19C20H40.1°0.1°
H11O1C1H1259.6°60.0°
H11O1C1H1359.7°60.0°
H12C1C2H1457.4°65.0°
H12C1C2H1562.1°175.0°
H13C1C2H1461.8°55.0°
H13C1C2H15178.7°65.0°
H14C2N1H2494.5°176.0°
H15C2N1H2425.0°63.9°
H16C3N1H24174.2°176.1°
H17C5C6H180.0°0.1°
H21C10C11H220.0°0.1°
H22C11C12H230.1°0.0°
H24N1C3H2555.9°63.9°

249524

PDB entries from 2026-02-18

PDB statisticsPDBj update infoContact PDBjnumon