VP9

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C7	doub	1.21Å	1.21Å
C	O	sing	1.43Å	1.42Å
O	C1	sing	1.36Å	1.36Å
C10	C9	sing	1.53Å	1.52Å
C10	C11	sing	1.51Å	1.49Å
C7	N	sing	1.35Å	1.40Å
C7	C6	sing	1.47Å	1.48Å
C9	C8	sing	1.53Å	1.51Å
C8	N	sing	1.46Å	1.45Å
C8	C12	sing	1.51Å	1.51Å
C11	O2	doub	1.21Å	1.22Å
C11	N1	sing	1.34Å	1.36Å
N	C13	sing	1.34Å	1.40Å
C1	C6	doub	1.39Å	1.40Å	Aromatic
C1	C2	sing	1.40Å	1.38Å	Aromatic
C6	C5	sing	1.41Å	1.38Å	Aromatic
C12	N1	sing	1.34Å	1.36Å
C12	O3	doub	1.21Å	1.22Å
C2	C3	doub	1.37Å	1.38Å	Aromatic
C13	C5	sing	1.47Å	1.48Å
C13	O4	doub	1.22Å	1.21Å
C5	C4	doub	1.39Å	1.41Å	Aromatic
C3	C4	sing	1.40Å	1.40Å	Aromatic
C4	N2	sing	1.39Å	1.36Å
C2	H1	sing	1.08Å	1.08Å
C3	H2	sing	1.08Å	1.08Å
N1	H3	sing	0.97Å	1.00Å
C8	H4	sing	1.09Å	1.10Å
C9	H5	sing	1.09Å	1.10Å
C9	H6	sing	1.09Å	1.10Å
C10	H7	sing	1.09Å	1.10Å
C10	H8	sing	1.09Å	1.10Å
N2	H9	sing	0.97Å	1.00Å
N2	H10	sing	0.97Å	1.00Å
C	H11	sing	1.09Å	1.10Å
C	H12	sing	1.09Å	1.10Å
C	H13	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C7	N	124.9°	125.7°
O1	C7	C6	129.1°	125.8°
C	O	C1	117.3°	116.9°
O	C	H11	109.5°	109.5°
O	C	H12	109.5°	109.5°
O	C	H13	109.5°	109.4°
O	C1	C6	115.6°	120.1°
O	C1	C2	124.2°	120.2°
C9	C10	C11	112.4°	109.1°
C10	C9	C8	109.4°	108.4°
C10	C9	H5	109.5°	109.5°
C10	C9	H6	109.5°	110.0°
C9	C10	H7	108.7°	109.6°
C9	C10	H8	108.7°	109.5°
C10	C11	O2	122.6°	119.4°
C10	C11	N1	116.9°	121.3°
C11	C10	H7	108.8°	109.7°
C11	C10	H8	108.7°	109.4°
N	C7	C6	106.0°	108.5°
C7	N	C8	124.4°	124.4°
C7	N	C13	111.5°	111.1°
C7	C6	C1	131.7°	134.3°
C7	C6	C5	108.3°	105.9°
C9	C8	N	107.8°	109.5°
C9	C8	C12	112.4°	109.2°
C9	C8	H4	108.9°	109.5°
C8	C9	H5	109.5°	109.6°
C8	C9	H6	109.5°	109.6°
N	C8	C12	109.1°	109.5°
C8	N	C13	124.1°	124.5°
N	C8	H4	109.7°	109.5°
C8	C12	N1	117.4°	121.3°
C8	C12	O3	121.1°	119.4°
C12	C8	H4	108.9°	109.5°
O2	C11	N1	120.5°	119.3°
C11	N1	C12	126.8°	122.6°
C11	N1	H3	116.5°	118.7°
N	C13	C5	106.0°	108.7°
N	C13	O4	124.8°	125.7°
C6	C1	C2	120.2°	119.7°
C1	C6	C5	119.9°	119.8°
C1	C2	C3	119.7°	120.6°
C1	C2	H1	120.1°	119.7°
C6	C5	C13	108.1°	105.8°
C6	C5	C4	120.7°	119.8°
N1	C12	O3	121.5°	119.3°
C12	N1	H3	116.6°	118.7°
C2	C3	C4	121.7°	120.5°
C3	C2	H1	120.1°	119.7°
C2	C3	H2	119.2°	119.8°
C5	C13	O4	129.1°	125.7°
C13	C5	C4	131.2°	134.4°
C5	C4	C3	117.7°	119.6°
C5	C4	N2	121.5°	120.2°
C3	C4	N2	120.8°	120.2°
C4	C3	H2	119.1°	119.7°
C4	N2	H9	109.5°	120.0°
C4	N2	H10	109.5°	120.1°
H5	C9	H6	109.5°	109.6°
H7	C10	H8	109.4°	109.6°
H9	N2	H10	109.4°	119.9°
H11	C	H12	109.5°	109.5°
H11	C	H13	109.5°	109.4°
H12	C	H13	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C7	N	C6	178.3°	180.0°
O1	C7	N	C8	2.0°	0.0°
O1	C7	N	C13	178.1°	180.0°
O1	C7	C6	C1	2.6°	0.1°
O1	C7	C6	C5	177.5°	180.0°
C	O	C1	C6	176.9°	180.0°
C	O	C1	C2	2.8°	0.2°
O	C	H11	H12	120.0°	120.0°
O	C	H11	H13	120.0°	120.0°
O	C	H12	H13	120.0°	119.9°
O	C1	C6	C7	0.5°	0.2°
O	C1	C6	C2	179.7°	179.8°
O	C1	C6	C5	179.4°	179.7°
O	C1	C2	C3	179.9°	179.8°
O	C1	C2	H1	0.1°	0.2°
C1	O	C	H11	180.0°	60.0°
C1	O	C	H12	60.0°	60.1°
C1	O	C	H13	60.0°	180.0°
C9	C10	C11	H7	120.4°	120.0°
C9	C10	C11	H8	120.4°	119.8°
C10	C9	C8	H5	120.0°	119.6°
C10	C9	C8	H6	120.0°	120.1°
C10	C9	C8	N	172.0°	175.7°
C10	C9	C8	C12	51.7°	55.8°
C9	C10	C11	O2	151.3°	151.0°
C9	C10	C11	N1	29.3°	29.0°
C10	C9	C8	H4	69.1°	64.2°
C10	C9	H5	H6	120.0°	120.8°
C9	C10	H7	H8	118.7°	120.1°
C11	C10	C9	C8	54.4°	55.7°
C10	C11	O2	N1	179.4°	180.0°
C10	C11	N1	C12	0.1°	0.2°
C10	C11	N1	H3	179.9°	179.5°
C11	C10	C9	H5	65.6°	175.4°
C11	C10	C9	H6	174.4°	64.1°
C11	C10	H7	H8	118.7°	120.1°
C7	N	C8	C9	106.1°	59.7°
C7	N	C8	C13	179.9°	180.0°
C7	N	C8	C12	131.6°	60.0°
N	C7	C6	C1	179.1°	180.0°
N	C7	C6	C5	0.8°	0.0°
C7	N	C13	C5	0.3°	0.0°
C7	N	C13	O4	179.1°	179.9°
C7	N	C8	H4	12.4°	179.9°
C6	C7	N	C8	179.6°	180.0°
C6	C7	N	C13	0.3°	0.1°
C7	C6	C1	C5	179.9°	179.9°
C7	C6	C1	C2	179.8°	180.0°
C7	C6	C5	C13	0.9°	0.0°
C7	C6	C5	C4	178.9°	180.0°
C9	C8	N	C12	122.3°	119.7°
C9	C8	N	H4	118.5°	120.2°
C9	C8	C12	H4	120.8°	119.9°
C9	C8	N	C13	73.8°	120.3°
C9	C8	C12	N1	24.6°	29.1°
C9	C8	C12	O3	158.1°	150.9°
C8	C9	H5	H6	120.1°	120.4°
C8	C9	C10	H7	66.1°	64.3°
C8	C9	C10	H8	174.8°	175.5°
N	C8	C12	H4	119.6°	120.1°
N	C8	C12	N1	144.2°	149.0°
N	C8	C12	O3	38.5°	31.0°
C8	N	C13	C5	179.8°	180.0°
C8	N	C13	O4	0.9°	0.1°
N	C8	C9	H5	52.0°	64.8°
N	C8	C9	H6	68.0°	55.6°
C8	C12	N1	C11	2.4°	0.2°
C12	C8	N	C13	48.5°	120.0°
C8	C12	N1	O3	177.3°	180.0°
C8	C12	N1	H3	177.6°	179.5°
C12	C8	C9	H5	68.3°	175.3°
C12	C8	C9	H6	171.7°	64.3°
O2	C11	N1	C12	179.5°	179.8°
O2	C11	N1	H3	0.5°	0.6°
O2	C11	C10	H7	88.3°	89.0°
O2	C11	C10	H8	30.8°	31.2°
C11	N1	C12	H3	180.0°	179.6°
C11	N1	C12	O3	174.9°	179.8°
N1	C11	C10	H7	91.1°	91.0°
N1	C11	C10	H8	149.8°	148.8°
N	C13	C5	C6	0.8°	0.0°
N	C13	C5	O4	179.3°	179.9°
N	C13	C5	C4	179.1°	179.9°
C13	N	C8	H4	167.7°	0.1°
C6	C1	C2	C3	0.5°	0.0°
C1	C6	C5	C13	179.0°	180.0°
C1	C6	C5	C4	1.1°	0.1°
C6	C1	C2	H1	179.6°	180.0°
C2	C1	C6	C5	0.3°	0.1°
C1	C2	C3	H1	180.0°	180.0°
C1	C2	C3	C4	0.4°	0.0°
C1	C2	C3	H2	179.6°	179.9°
C6	C5	C13	C4	179.9°	180.0°
C6	C5	C13	O4	178.5°	179.9°
C6	C5	C4	C3	1.2°	0.1°
C6	C5	C4	N2	177.3°	179.9°
N1	C12	C8	H4	96.2°	90.9°
O3	C12	N1	H3	5.1°	0.5°
O3	C12	C8	H4	81.1°	89.1°
C2	C3	C4	C5	0.4°	0.0°
C2	C3	C4	H2	180.0°	179.9°
C2	C3	C4	N2	178.1°	180.0°
C13	C5	C4	C3	179.0°	180.0°
C13	C5	C4	N2	2.5°	0.0°
O4	C13	C5	C4	1.6°	0.0°
C5	C4	C3	N2	178.5°	180.0°
C5	C4	C3	H2	179.6°	179.9°
C5	C4	N2	H9	180.0°	180.0°
C5	C4	N2	H10	60.0°	0.0°
C4	C3	C2	H1	179.6°	180.0°
C3	C4	N2	H9	1.5°	0.0°
C3	C4	N2	H10	118.4°	180.0°
N2	C4	C3	H2	1.9°	0.1°
C4	N2	H9	H10	120.0°	180.0°
H1	C2	C3	H2	0.4°	0.0°
H4	C8	C9	H5	170.9°	55.4°
H4	C8	C9	H6	50.9°	175.8°
H5	C9	C10	H7	173.9°	55.3°
H5	C9	C10	H8	54.8°	64.9°
H6	C9	C10	H7	53.9°	175.8°
H6	C9	C10	H8	65.2°	55.6°
H11	C	H12	H13	120.0°	120.0°

Release date:	2023-07-19
Definition date:	2023-03-24
Last modified:	2023-07-14
Release status:	REL
Processing site:	PDBE
Derived from:	8OJH