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VDN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.53Å
C1H11sing1.09Å1.12Å
C1H12sing1.09Å1.12Å
C1H13sing1.09Å1.12Å
C2O3sing1.43Å1.43Å
C2H21sing1.09Å1.11Å
C2H22sing1.09Å1.12Å
O3C4sing1.36Å1.38Å
C4C5doub1.39Å1.39ÅAromatic
C4C9sing1.40Å1.55ÅAromatic
C5C6sing1.38Å1.47ÅAromatic
C5H5sing1.08Å1.10Å
C6C7doub1.39Å1.38ÅAromatic
C6H6sing1.08Å1.10Å
C7C8sing1.38Å1.49ÅAromatic
C7S10sing1.76Å1.74Å
C8C9doub1.40Å1.35ÅAromatic
C8H8sing1.08Å1.10Å
C9C21sing1.47Å1.47ÅAromatic
S10O11doub1.42Å1.45Å
S10O12doub1.42Å1.45Å
S10N14sing1.66Å1.66Å
C13C20sing1.53Å1.55Å
C13H131sing1.09Å1.12Å
C13H132sing1.09Å1.11Å
C13H133sing1.09Å1.11Å
N14C15sing1.47Å1.49Å
N14C19sing1.47Å1.48Å
C15C16sing1.53Å1.55Å
C15H151sing1.09Å1.12Å
C15H152sing1.09Å1.11Å
C16N17sing1.47Å1.48Å
C16H161sing1.09Å1.12Å
C16H162sing1.09Å1.11Å
N17C18sing1.47Å1.48Å
N17C20sing1.47Å1.47Å
C18C19sing1.53Å1.54Å
C18H181sing1.09Å1.11Å
C18H182sing1.09Å1.12Å
C19H191sing1.09Å1.12Å
C19H192sing1.09Å1.11Å
C20H201sing1.09Å1.11Å
C20H202sing1.09Å1.12Å
C21N22doub1.32Å1.36ÅAromatic
C21N26sing1.36Å1.36ÅAromatic
N22C23sing1.35Å1.42ÅAromatic
C23C24sing1.47Å1.49ÅAromatic
C23O27doub1.22Å1.21Å
C24N25sing1.38Å1.43ÅAromatic
C24C28doub1.36Å1.39ÅAromatic
N25N26sing1.40Å1.34ÅAromatic
N25C30sing1.34Å1.36ÅAromatic
N26H26sing0.97Å1.02Å
C28N29sing1.34Å1.44ÅAromatic
C28C31sing1.51Å1.52Å
N29C30doub1.31Å1.29ÅAromatic
C30C32sing1.51Å1.52Å
C31H311sing1.09Å1.12Å
C31H312sing1.09Å1.11Å
C31H313sing1.09Å1.12Å
C32C33sing1.53Å1.55Å
C32H321sing1.09Å1.11Å
C32H322sing1.09Å1.12Å
C33C34sing1.53Å1.53Å
C33H331sing1.09Å1.11Å
C33H332sing1.09Å1.11Å
C34H341sing1.09Å1.11Å
C34H342sing1.09Å1.12Å
C34H343sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1H11114.4°109.5°
C2C1H12103.7°109.5°
C2C1H13114.4°109.5°
C1C2O3103.7°109.5°
C1C2H21114.4°109.5°
C1C2H22114.4°109.5°
H11C1H12114.4°109.4°
H11C1H1396.1°109.5°
H12C1H13114.4°109.4°
O3C2H21114.4°109.4°
O3C2H22114.4°109.5°
C2O3C4126.9°106.8°
H21C2H2296.1°109.4°
O3C4C5126.6°120.2°
O3C4C9115.1°120.1°
C5C4C9118.3°119.7°
C4C5C6121.4°120.1°
C4C5H5116.2°119.9°
C4C9C8118.7°119.6°
C4C9C21121.8°120.2°
C6C5H5122.5°119.9°
C5C6C7119.7°120.4°
C5C6H6123.3°119.8°
C7C6H6117.0°119.8°
C6C7C8120.0°120.3°
C6C7S10122.0°119.9°
C8C7S10118.0°119.9°
C7C8C9121.9°119.9°
C7C8H8124.2°120.0°
C7S10O11106.8°105.8°
C7S10O12106.0°105.8°
C7S10N14108.4°107.3°
C9C8H8113.9°120.1°
C8C9C21119.5°120.2°
C9C21N22121.8°118.7°
C9C21N26119.5°118.8°
O11S10O12114.3°125.4°
O11S10N14110.8°105.7°
O12S10N14110.1°105.8°
S10N14C15114.1°121.0°
S10N14C19109.8°121.0°
C20C13H131110.0°109.5°
C20C13H132115.6°109.4°
C20C13H133110.0°109.5°
C13C20N17115.6°109.5°
C13C20H201110.0°109.5°
C13C20H202110.0°109.5°
H131C13H132109.9°109.4°
H131C13H133100.3°109.6°
H132C13H133110.0°109.5°
C15N14C19110.8°117.9°
N14C15C16112.8°108.6°
N14C15H151111.0°109.8°
N14C15H152111.0°109.4°
N14C19C18112.2°108.4°
N14C19H191111.2°109.6°
N14C19H192111.2°109.7°
C16C15H151111.0°109.7°
C16C15H152111.0°109.7°
C15C16N17110.5°109.7°
C15C16H161111.8°109.5°
C15C16H162111.8°109.3°
H151C15H15299.3°109.7°
N17C16H161111.8°109.4°
N17C16H162111.8°109.5°
C16N17C18109.2°107.4°
C16N17C20110.6°106.7°
H161C16H16298.6°109.4°
C18N17C20112.3°106.7°
N17C18C19112.4°109.6°
N17C18H181111.2°109.4°
N17C18H182111.1°109.5°
N17C20H201110.0°109.4°
N17C20H202110.0°109.5°
C19C18H181111.1°109.4°
C19C18H182111.1°109.4°
C18C19H191111.2°109.7°
C18C19H192111.2°109.7°
H181C18H18299.2°109.4°
H191C19H19299.2°109.7°
H201C20H202100.3°109.5°
N22C21N26118.7°122.4°
C21N22C23127.0°121.5°
C21N26N25120.3°120.2°
C21N26H26108.3°119.9°
N22C23C24112.8°118.8°
N22C23O27122.0°120.6°
C24C23O27125.2°120.6°
C23C24N25117.2°118.5°
C23C24C28142.2°134.9°
N25C24C28100.6°106.7°
C24N25N26123.9°118.6°
C24N25C30109.6°107.0°
C24C28N29112.9°107.7°
C24C28C31124.5°126.2°
N26N25C30126.5°134.5°
N25N26H26108.3°119.9°
N25C30N29113.3°109.1°
N25C30C32119.2°125.5°
N29C28C31122.6°126.2°
C28N29C30103.6°109.6°
C28C31H311106.9°109.4°
C28C31H312124.5°109.5°
C28C31H313106.9°109.4°
N29C30C32127.5°125.5°
C30C32C33116.2°109.5°
C30C32H321109.8°109.5°
C30C32H322109.8°109.5°
H311C31H312106.9°109.5°
H311C31H313102.7°109.5°
H312C31H313106.9°109.5°
C33C32H321109.8°109.4°
C33C32H322109.8°109.4°
C32C33C34110.6°109.5°
C32C33H331111.8°109.4°
C32C33H332111.8°109.4°
H321C32H322100.4°109.5°
C34C33H331111.8°109.5°
C34C33H332111.8°109.5°
C33C34H341111.8°109.4°
C33C34H342110.6°109.4°
C33C34H343111.8°109.4°
H331C33H33298.6°109.5°
H341C34H342111.8°109.5°
H341C34H34398.6°109.6°
H342C34H343111.8°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1H11H12119.4°120.0°
C2C1H11H13120.3°120.1°
C2C1H12H13125.3°120.0°
C1C2O3H21125.3°120.0°
C1C2O3H22125.3°120.1°
C1C2H21H22120.3°120.0°
C1C2O3C4179.4°180.0°
H11C1H12H13109.5°120.0°
H11C1C2O354.7°180.0°
H11C1C2H2170.5°60.1°
H11C1C2H22180.0°59.9°
H12C1C2O3180.0°60.0°
H12C1C2H2154.7°180.0°
H12C1C2H2254.8°60.0°
H13C1C2O354.8°60.0°
H13C1C2H21180.0°60.0°
H13C1C2H2270.5°180.0°
O3C2H21H22120.3°119.9°
C2O3C4C50.2°0.1°
C2O3C4C9180.0°179.4°
H21C2O3C455.4°60.0°
H22C2O3C454.1°59.9°
O3C4C5C9179.8°179.4°
O3C4C5C6179.8°180.0°
O3C4C5H50.2°0.3°
O3C4C9C8179.9°180.0°
O3C4C9C210.7°0.3°
C4C5C6H5180.0°179.7°
C4C5C6C70.3°0.3°
C4C5C6H6179.7°179.7°
C5C4C9C80.3°0.6°
C5C4C9C21179.6°179.6°
C9C4C5C60.4°0.6°
C9C4C5H5179.6°179.7°
C4C9C8C70.2°0.2°
C4C9C8C21179.2°179.8°
C4C9C8H8179.8°179.7°
C4C9C21N2247.6°39.7°
C4C9C21N26133.0°140.3°
C5C6C7H6180.0°180.0°
C5C6C7C80.2°0.1°
C5C6C7S10179.5°180.0°
H5C5C6C7179.7°180.0°
H5C5C6H60.3°0.1°
C6C7C8S10179.7°179.9°
C6C7C8C90.2°0.1°
C6C7C8H8179.8°179.9°
C6C7S10O1172.4°22.5°
C6C7S10O12165.4°157.4°
C6C7S10N1447.1°90.0°
H6C6C7C8179.8°179.9°
H6C6C7S100.5°0.0°
C7C8C9H8180.0°180.0°
C7C8C9C21179.5°180.0°
C8C7S10O11107.4°157.4°
C8C7S10O1214.9°22.5°
C8C7S10N14133.2°90.1°
S10C7C8C9179.5°180.0°
S10C7C8H80.5°0.0°
C7S10O11O12116.9°123.2°
C7S10O11N14117.9°113.7°
C7S10O12N14117.1°113.7°
C7S10N14C15116.5°90.4°
C7S10N14C19118.5°90.1°
C8C9C21N22131.6°140.0°
C8C9C21N2647.8°39.9°
H8C8C9C210.5°0.0°
C9C21N22N26179.4°180.0°
C9C21N22C23179.6°179.8°
C9C21N26N25179.7°180.0°
C9C21N26H2655.0°0.1°
O11S10O12N14125.6°123.2°
O11S10N14C15126.6°157.1°
O11S10N14C191.6°22.5°
O12S10N14C150.9°22.2°
O12S10N14C19125.9°157.3°
S10N14C15C19124.5°179.6°
S10N14C15C16177.3°131.0°
S10N14C15H15157.5°11.0°
S10N14C15H15252.0°109.4°
S10N14C19C18177.9°130.9°
S10N14C19H19152.7°109.4°
S10N14C19H19256.8°11.1°
C20C13H131H132128.4°119.9°
C20C13H131H133115.8°120.1°
C20C13H132H133125.3°120.0°
C13C20N17C16149.5°65.5°
C13C20N17C1888.2°180.0°
C13C20N17H201125.3°120.0°
C13C20N17H202125.3°120.1°
C13C20H201H202115.8°120.0°
H131C13H132H133109.5°120.1°
H131C13C20N1754.8°179.9°
H131C13C20H20170.5°60.1°
H131C13C20H202180.0°59.9°
H132C13C20N17180.0°60.1°
H132C13C20H20154.7°180.0°
H132C13C20H20254.8°60.0°
H133C13C20N1754.7°59.9°
H133C13C20H201180.0°60.0°
H133C13C20H20270.5°180.0°
N14C15C16H151125.3°120.1°
N14C15C16H152125.2°119.5°
N14C15H151H152116.9°120.2°
N14C15C16N1757.0°55.7°
N14C15C16H16168.3°175.8°
N14C15C16H162177.8°64.3°
C15N14C19C1851.0°48.6°
C15N14C19H19174.2°71.0°
C15N14C19H192176.2°168.4°
C19N14C15C1652.8°48.6°
C19N14C15H151178.1°168.5°
C19N14C15H15272.5°71.1°
N14C19C18N1754.6°55.9°
N14C19C18H191125.2°119.6°
N14C19C18H192125.2°119.8°
N14C19C18H18170.7°175.9°
N14C19C18H182179.9°64.2°
N14C19H191H192117.1°120.5°
C16C15H151H152116.9°120.5°
C15C16N17H161125.3°120.1°
C15C16N17H162125.3°120.0°
C15C16H161H162117.7°119.8°
C15C16N17C1857.7°66.8°
C15C16N17C20178.2°179.1°
H151C15C16N17177.7°175.8°
H151C15C16H16157.0°64.1°
H151C15C16H16252.5°55.7°
H152C15C16N1768.3°63.7°
H152C15C16H161166.5°56.3°
H152C15C16H16257.0°176.2°
N17C16H161H162117.7°120.0°
C16N17C18C20123.0°114.1°
C16N17C18C1957.3°66.9°
C16N17C18H18168.0°173.1°
C16N17C18H182177.4°53.2°
C16N17C20H20124.3°174.6°
C16N17C20H20285.2°54.6°
H161C16N17C1867.5°173.1°
H161C16N17C2056.5°59.0°
H162C16N17C18177.0°53.2°
H162C16N17C2053.0°60.9°
N17C18C19H181125.3°120.0°
N17C18C19H182125.2°120.1°
N17C18H181H182117.0°120.0°
N17C18C19H19170.6°63.7°
N17C18C19H192179.9°175.7°
C18N17C20H201146.5°60.0°
C18N17C20H20237.0°59.9°
C20N17C18C19179.6°179.0°
C20N17C18H18155.1°59.0°
C20N17C18H18254.4°60.9°
N17C20H201H202115.8°120.0°
C19C18H181H182117.0°119.9°
C18C19H191H192117.1°120.6°
H181C18C19H191164.1°56.3°
H181C18C19H19254.6°64.3°
H182C18C19H19154.6°176.2°
H182C18C19H19254.9°55.6°
C21N22C23C240.1°0.4°
C21N22C23O27180.0°180.0°
N22C21N26N250.3°0.1°
N22C21N26H26125.6°180.0°
N26C21N22C230.1°0.3°
C21N26N25C240.4°0.0°
C21N26N25H26125.3°179.9°
C21N26N25C30179.8°179.5°
N22C23C24O27179.9°179.6°
N22C23C24N250.2°0.4°
N22C23C24C28179.8°179.9°
C23C24N25C28180.0°179.8°
C23C24N25N260.4°0.2°
C23C24N25C30179.8°179.8°
C23C24C28N29180.0°180.0°
C23C24C28C310.2°0.0°
O27C23C24N25179.9°180.0°
O27C23C24C280.1°0.3°
C24N25N26C30179.4°179.5°
C24N25N26H26125.7°180.0°
N25C24C28N290.0°0.3°
N25C24C28C31179.8°179.7°
C24N25C30N290.3°0.5°
C24N25C30C32179.7°179.9°
C28C24N25N26179.6°180.0°
C28C24N25C300.2°0.4°
C24C28N29C31179.8°180.0°
C24C28N29C300.2°0.0°
C24C28C31H31154.7°90.0°
C24C28C31H312180.0°30.0°
C24C28C31H31354.7°150.0°
N26N25C30N29179.7°180.0°
N26N25C30C320.3°0.4°
C30N25N26H2655.0°0.6°
N25C30N29C280.3°0.3°
N25C30N29C32180.0°179.7°
N25C30C32C3386.2°90.3°
N25C30C32H32139.1°29.7°
N25C30C32H322148.5°149.7°
C28N29C30C32179.7°180.0°
N29C28C31H311125.1°90.0°
N29C28C31H3120.2°150.0°
N29C28C31H313125.5°30.0°
C31C28N29C30179.6°180.0°
C28C31H311H312135.3°120.0°
C28C31H311H313112.3°120.0°
C28C31H312H313125.3°120.0°
N29C30C32C3393.8°90.1°
N29C30C32H321140.9°149.9°
N29C30C32H32231.5°29.9°
C30C32C33H321125.3°120.0°
C30C32C33H322125.3°120.0°
C30C32H321H322115.5°120.1°
C30C32C33C3482.9°180.0°
C30C32C33H33142.4°60.0°
C30C32C33H332151.8°60.0°
H311C31H312H313109.4°120.1°
C33C32H321H322115.6°120.0°
C32C33C34H331125.3°120.0°
C32C33C34H332125.3°120.0°
C32C33H331H332117.7°120.0°
C32C33C34H34154.7°180.0°
C32C33C34H342180.0°60.0°
C32C33C34H34354.8°60.0°
H321C32C33C34151.9°60.0°
H321C32C33H33182.9°180.0°
H321C32C33H33226.6°60.0°
H322C32C33C3442.4°60.0°
H322C32C33H331167.6°60.0°
H322C32C33H33282.9°180.0°
C34C33H331H332117.7°120.1°
C33C34H341H342124.6°119.9°
C33C34H341H343117.7°120.0°
C33C34H342H343125.2°119.9°
H331C33C34H341180.0°60.0°
H331C33C34H34254.7°180.0°
H331C33C34H34370.5°60.0°
H332C33C34H34170.6°60.0°
H332C33C34H34254.7°60.0°
H332C33C34H343179.9°180.0°
H341C34H342H343109.5°120.1°

225158

PDB entries from 2024-09-18

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