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V3L

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C6doub1.33Å1.36ÅAromatic
N1C2sing1.32Å1.35ÅAromatic
C2N3doub1.32Å1.34ÅAromatic
C2H2sing1.08Å1.08Å
C4N3sing1.33Å1.35ÅAromatic
C5C4doub1.40Å1.46ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C6C5sing1.41Å1.47ÅAromatic
C5N7sing1.35Å1.34ÅAromatic
N6C6sing1.38Å1.34Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
N7C8doub1.30Å1.33ÅAromatic
C8N9sing1.36Å1.34ÅAromatic
C8H8sing1.08Å1.08Å
N9C1'sing1.46Å1.48Å
OP1Pdoub1.48Å1.52Å
PO5'sing1.61Å1.60Å
POP3sing1.61Å1.52Å
POP2sing1.61Å1.51Å
O15PBsing1.61Å1.60Å
O2BPBdoub1.48Å1.51Å
PBO3Bsing1.61Å1.51Å
PBO1Bsing1.61Å1.50Å
O2'C10sing1.43Å1.43Å
C10C12sing1.54Å1.53Å
C10O14sing1.44Å1.43Å
C10H1''sing1.09Å1.10Å
O4'C1'sing1.44Å1.41Å
C1'C2'sing1.55Å1.53Å
C1'H1'sing1.09Å1.10Å
OP3HOP3sing0.97Å0.95Å
O1BHO1Bsing0.97Å0.95Å
O12C12sing1.43Å1.42Å
C12C13sing1.55Å1.53Å
C12H2''sing1.09Å1.10Å
O12HO2'sing0.97Å0.95Å
C3'C2'sing1.55Å1.53Å
C2'O2'sing1.43Å1.44Å
C2'H2'sing1.09Å1.10Å
O13C13sing1.43Å1.43Å
C13C14sing1.55Å1.52Å
C13H3''sing1.09Å1.10Å
O13HO13sing0.97Å0.95Å
C4'C3'sing1.54Å1.53Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
O3BHO3Bsing0.97Å0.95Å
O14C14sing1.44Å1.44Å
C14C15sing1.53Å1.53Å
C14H4''sing1.09Å1.10Å
O4'C4'sing1.44Å1.43Å
C5'C4'sing1.53Å1.52Å
C4'H4'sing1.09Å1.10Å
C15O15sing1.43Å1.43Å
C15H5''sing1.09Å1.10Å
C15H5AAsing1.09Å1.10Å
C5'O5'sing1.43Å1.44Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6N1C2121.0°121.2°
N1C6C5118.6°118.4°
N1C6N6123.4°120.8°
N1C2N3123.2°122.5°
N1C2H2118.4°118.7°
N3C2H2118.4°118.8°
C2N3C4121.0°120.6°
N3C4C5119.5°119.1°
N3C4N9135.9°134.9°
C5C4N9104.5°106.0°
C4C5C6116.6°118.2°
C4C5N7107.6°107.2°
C4N9C8109.9°107.4°
C4N9C1'125.1°126.3°
C6C5N7135.8°134.7°
C5C6N6117.9°120.8°
C5N7C8107.2°109.4°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
HN6N6HN6A109.4°120.0°
N7C8N9110.8°110.0°
N7C8H8124.6°125.0°
N9C8H8124.6°125.1°
C8N9C1'124.7°126.2°
N9C1'O4'112.4°110.6°
N9C1'C2'107.0°110.7°
N9C1'H1'110.3°110.5°
OP1PO5'105.7°109.5°
OP1POP3115.3°109.5°
OP1POP2115.2°109.5°
O5'POP3103.8°109.5°
O5'POP2101.5°109.5°
PO5'C5'121.0°123.0°
OP3POP2113.2°109.5°
POP3HOP3109.5°114.0°
POP2HOP2109.5°114.0°
O15PBO2B107.1°109.5°
O15PBO3B102.9°109.5°
O15PBO1B104.1°109.5°
PBO15C15122.5°123.0°
O2BPBO3B113.2°109.5°
O2BPBO1B112.2°109.5°
O3BPBO1B116.1°109.5°
PBO3BHO3B109.5°114.0°
PBO1BHO1B109.5°114.0°
O2'C10C12110.1°109.9°
O2'C10O14108.4°109.8°
O2'C10H1''111.8°110.0°
C10O2'C2'117.0°114.0°
C12C10O14104.2°107.3°
C12C10H1''110.3°109.9°
C10C12O12111.6°110.5°
C10C12C13103.2°104.2°
C10C12H2''109.3°110.5°
O14C10H1''111.8°109.9°
C10O14C14109.0°107.0°
O4'C1'C2'106.1°103.5°
O4'C1'H1'111.3°110.7°
C1'O4'C4'111.4°107.0°
C2'C1'H1'109.5°110.6°
C1'C2'C3'103.2°102.1°
C1'C2'O2'108.7°110.9°
C1'C2'H2'109.2°110.9°
O12C12C13112.3°110.5°
O12C12H2''110.8°110.6°
C12O12HO2'109.5°114.0°
C13C12H2''109.3°110.4°
C12C13O13112.6°110.9°
C12C13C14103.8°102.1°
C12C13H3''109.7°110.9°
C3'C2'O2'115.6°110.9°
C3'C2'H2'109.3°110.9°
C2'C3'C4'104.4°104.2°
C2'C3'O3'113.8°110.5°
C2'C3'H3'108.9°110.5°
O2'C2'H2'110.6°110.8°
O13C13C14109.8°110.9°
O13C13H3''111.0°110.9°
C13O13HO13109.5°113.9°
C14C13H3''109.8°110.9°
C13C14O14107.7°103.5°
C13C14C15112.8°110.6°
C13C14H4''108.5°110.6°
C4'C3'O3'109.9°110.5°
C4'C3'H3'109.1°110.6°
C3'C4'O4'107.1°107.3°
C3'C4'C5'114.6°109.9°
C3'C4'H4'108.9°109.9°
O3'C3'H3'110.4°110.5°
C3'O3'HO3'109.5°113.9°
O14C14C15109.7°110.7°
O14C14H4''109.7°110.7°
C15C14H4''108.4°110.6°
C14C15O15111.4°109.5°
C14C15H5''109.0°109.5°
C14C15H5AA108.9°109.5°
O4'C4'C5'107.1°110.0°
O4'C4'H4'110.1°109.8°
C5'C4'H4'109.0°109.9°
C4'C5'O5'111.1°109.5°
C4'C5'H5'109.1°109.4°
C4'C5'H5'A109.1°109.5°
O15C15H5''109.0°109.5°
O15C15H5AA109.0°109.4°
H5''C15H5AA109.5°109.5°
O5'C5'H5'109.1°109.5°
O5'C5'H5'A109.1°109.5°
H5'C5'H5'A109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6N1C2N31.4°0.0°
C6N1C2H2178.6°180.0°
N1C6C5C42.5°0.1°
N1C6C5N6178.1°180.0°
N1C6C5N7179.1°180.0°
N1C6N6HN60.0°0.1°
N1C6N6HN6A120.0°180.0°
N1C2N3H2180.0°180.0°
N1C2N3C40.1°0.0°
C2N1C6C52.7°0.0°
C2N1C6N6179.4°180.0°
C2N3C4C50.2°0.0°
C2N3C4N9178.4°180.0°
H2C2N3C4179.9°180.0°
N3C4C5N9178.9°180.0°
N3C4C5C61.1°0.0°
N3C4C5N7179.9°180.0°
N3C4N9C8179.0°180.0°
N3C4N9C1'5.3°0.1°
C4C5C6N7178.4°179.9°
C4C5C6N6179.4°180.0°
C4C5N7C80.5°0.0°
C5C4N9C82.3°0.0°
C5C4N9C1'176.0°180.0°
N9C4C5C6180.0°179.9°
N9C4C5N71.1°0.0°
C4N9C8N72.8°0.0°
C4N9C8C1'173.7°180.0°
C4N9C8H8177.2°180.0°
C4N9C1'O4'139.9°160.9°
C4N9C1'C2'104.0°84.9°
C4N9C1'H1'15.0°37.9°
C5C6N6HN6177.9°179.9°
C5C6N6HN6A57.9°0.0°
C6C5N7C8178.0°179.9°
N7C5C6N61.0°0.0°
C5N7C8N91.9°0.0°
C5N7C8H8178.0°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°180.0°
N7C8N9C1'176.5°180.0°
C8N9C1'O4'47.3°19.1°
C8N9C1'C2'68.7°95.0°
C8N9C1'H1'172.2°142.1°
H8C8N9C1'3.5°0.0°
N9C1'O4'C2'116.6°118.6°
N9C1'O4'H1'124.3°122.9°
N9C1'C2'H1'119.6°122.8°
N9C1'C2'C3'148.3°155.5°
N9C1'C2'O2'88.5°86.3°
N9C1'C2'H2'32.2°37.3°
N9C1'O4'C4'138.1°158.6°
OP1PO5'OP3121.8°120.0°
OP1PO5'OP2120.5°120.0°
OP1POP3OP2135.7°120.0°
OP1POP3HOP30.0°60.0°
OP1POP2HOP20.0°179.9°
OP1PO5'C5'57.3°55.0°
O5'POP3OP2109.2°120.0°
O5'POP3HOP3115.1°180.0°
O5'POP2HOP2113.7°60.1°
PO5'C5'C4'165.4°180.0°
PO5'C5'H5'45.2°60.0°
PO5'C5'H5'A74.3°60.0°
OP3POP2HOP2135.7°59.9°
OP3PO5'C5'64.5°175.0°
OP2POP3HOP3135.7°60.0°
OP2PO5'C5'177.9°65.0°
O15PBO2BO3B112.7°120.0°
O15PBO2BO1B113.6°120.0°
O15PBO3BO1B113.0°120.0°
O15PBO1BHO1B115.4°60.0°
O15PBO3BHO3B115.3°180.0°
PBO15C15C14164.0°180.0°
PBO15C15H5''43.7°60.0°
PBO15C15H5AA75.7°60.0°
O2BPBO3BO1B131.8°120.0°
O2BPBO1BHO1B0.0°180.0°
O2BPBO3BHO3B0.0°60.0°
O2BPBO15C1571.4°55.0°
O3BPBO1BHO1B132.3°60.0°
O3BPBO15C1548.2°175.0°
O1BPBO3BHO3B131.8°60.0°
O1BPBO15C15169.6°65.0°
O2'C10C12O14116.1°119.4°
O2'C10C12H1''123.8°121.1°
O2'C10O14H1''123.6°121.1°
C10O2'C2'C1'149.1°150.0°
O2'C10C12O1239.6°1.3°
O2'C10C12C1381.2°117.4°
O2'C10C12H2''162.5°124.0°
C10O2'C2'C3'95.5°97.3°
C10O2'C2'H2'29.3°26.4°
O2'C10O14C1485.9°93.0°
C12C10O14H1''119.1°119.5°
C10C12O12C13115.4°114.8°
C10C12O12H2''122.0°122.7°
C10C12C13H2''116.2°118.7°
C10C12O12HO2'180.0°61.5°
C12C10O2'C2'168.3°170.0°
C10C12C13O1393.4°139.1°
C10C12C13C1425.3°20.9°
C10C12C13H3''142.5°97.3°
C12C10O14C1431.4°26.5°
O14C10C12O12155.7°120.7°
O14C10C12C1334.8°2.0°
O14C10C12H2''81.4°116.6°
O14C10O2'C2'78.3°72.2°
C10O14C14C1315.1°40.0°
C10O14C14C15138.3°158.5°
C10O14C14H4''102.7°78.5°
H1''C10C12O1284.2°119.9°
H1''C10C12C13154.9°121.5°
H1''C10C12H2''38.7°2.9°
H1''C10O2'C2'45.3°48.9°
H1''C10O14C14150.5°145.9°
O4'C1'C2'H1'120.2°118.6°
O4'C1'C2'C3'28.2°37.0°
O4'C1'C2'O2'151.3°155.2°
O4'C1'C2'H2'88.0°81.2°
C1'O4'C4'C3'5.5°26.4°
C1'O4'C4'C5'128.9°146.0°
C1'O4'C4'H4'112.7°93.0°
C1'C2'C3'O2'118.4°118.2°
C1'C2'C3'H2'116.1°118.1°
C1'C2'O2'H2'119.9°123.6°
C1'C2'C3'C4'24.3°20.9°
C1'C2'C3'O3'95.5°97.8°
C1'C2'C3'H3'140.7°139.7°
C2'C1'O4'C4'21.5°40.0°
H1'C1'C2'C3'92.1°81.7°
H1'C1'C2'O2'31.1°36.6°
H1'C1'C2'H2'151.8°160.2°
H1'C1'O4'C4'97.6°78.6°
O12C12C13H2''123.4°122.6°
O12C12C13O1326.9°20.4°
O12C12C13C14145.6°97.8°
O12C12C13H3''97.2°144.0°
C13C12O12HO2'64.6°176.3°
C12C13O13C14115.1°112.7°
C12C13O13H3''123.4°123.6°
C12C13C14H3''117.1°118.1°
C12C13O13HO13180.0°61.4°
C12C13C14O147.4°37.0°
C12C13C14C15113.8°155.5°
C12C13C14H4''126.1°81.7°
H2''C12O12HO2'58.0°61.2°
H2''C12C13O13150.4°102.2°
H2''C12C13C1491.0°139.6°
H2''C12C13H3''26.2°21.4°
C3'C2'O2'H2'124.8°123.7°
C2'C3'C4'O3'122.5°118.7°
C2'C3'C4'H3'116.3°118.7°
C2'C3'O3'H3'122.9°122.5°
C2'C3'O3'HO3'180.0°180.0°
C2'C3'C4'O4'12.6°2.0°
C2'C3'C4'C5'106.0°121.6°
C2'C3'C4'H4'131.7°117.4°
O2'C2'C3'C4'142.7°139.1°
O2'C2'C3'O3'22.9°20.4°
O2'C2'C3'H3'100.8°102.1°
H2'C2'C3'C4'91.8°97.3°
H2'C2'C3'O3'148.3°144.0°
H2'C2'C3'H3'24.6°21.5°
O13C13C14H3''122.3°123.7°
O13C13C14O14113.1°155.2°
O13C13C14C15125.6°86.3°
O13C13C14H4''5.5°36.6°
C14C13O13HO1364.9°174.1°
C13C14O14C15123.1°118.5°
C13C14O14H4''117.9°118.5°
C13C14C15H4''120.1°122.8°
C13C14C15O1551.2°175.0°
C13C14C15H5''171.5°55.0°
C13C14C15H5AA69.1°65.1°
H3''C13O13HO1356.6°62.2°
H3''C13C14O14124.6°81.2°
H3''C13C14C153.3°37.4°
H3''C13C14H4''116.8°160.2°
C4'C3'O3'H3'120.4°122.7°
C4'C3'O3'HO3'63.3°65.3°
C3'C4'O4'C5'123.4°119.6°
C3'C4'O4'H4'118.2°119.4°
C3'C4'C5'H4'122.3°121.0°
C3'C4'C5'O5'54.7°175.0°
C3'C4'C5'H5'175.0°55.0°
C3'C4'C5'H5'A65.5°65.0°
O3'C3'C4'O4'109.8°120.7°
O3'C3'C4'C5'131.6°119.7°
O3'C3'C4'H4'9.2°1.3°
H3'C3'O3'HO3'57.1°57.4°
H3'C3'C4'O4'129.0°116.7°
H3'C3'C4'C5'10.4°2.9°
H3'C3'C4'H4'111.9°123.9°
O14C14C15H4''119.8°123.0°
O14C14C15O1568.9°70.9°
O14C14C15H5''51.4°169.1°
O14C14C15H5AA170.8°49.0°
C14C15O15H5''120.3°120.0°
C14C15O15H5AA120.3°120.0°
C14C15H5''H5AA119.1°120.0°
H4''C14C15O15171.3°52.1°
H4''C14C15H5''68.4°67.8°
H4''C14C15H5AA51.1°172.1°
O4'C4'C5'H4'119.1°121.0°
O4'C4'C5'O5'63.9°67.1°
O4'C4'C5'H5'56.3°173.0°
O4'C4'C5'H5'A175.8°52.9°
C4'C5'O5'H5'120.3°120.0°
C4'C5'O5'H5'A120.2°120.0°
C4'C5'H5'H5'A119.3°120.0°
H4'C4'C5'O5'177.0°53.9°
H4'C4'C5'H5'62.8°66.0°
H4'C4'C5'H5'A56.7°173.9°
O15C15H5''H5AA119.1°120.0°
O5'C5'H5'H5'A119.3°120.0°

222624

PDB entries from 2024-07-17

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