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SummaryGeometryRelated PDB entries

V0B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02sing1.51Å1.53Å
C03C02sing1.40Å1.47ÅAromatic
C03C04doub1.36Å1.48ÅAromatic
C19C20doub1.36Å1.49Å
C19C18sing1.40Å1.51Å
C02C25doub1.35Å1.50ÅAromatic
C04C05sing1.41Å1.58ÅAromatic
C20C21sing1.41Å1.55Å
C18C17doub1.35Å1.53Å
C25N24sing1.36Å1.54ÅAromatic
C05N24sing1.37Å1.39ÅAromatic
C05N06doub1.33Å1.37ÅAromatic
C17N16sing1.36Å1.51Å
C21N22doub1.33Å1.49Å
C21N16sing1.37Å1.49Å
N24C23sing1.37Å1.34ÅAromatic
N06C07sing1.34Å1.34ÅAromatic
N22C12sing1.33Å1.44Å
N16C14sing1.35Å1.48Å
C23C07doub1.35Å1.39ÅAromatic
C07C08sing1.51Å1.51Å
N09C08sing1.47Å1.45Å
N09C10sing1.35Å1.46Å
C12C10sing1.49Å1.49Å
C12C13doub1.39Å1.49Å
C14O15doub1.22Å1.19Å
C14C13sing1.40Å1.49Å
C10O11doub1.22Å1.17Å
C13H1sing1.08Å1.08Å
C17H3sing1.08Å1.08Å
C20H4sing1.08Å1.08Å
C01H5sing1.09Å1.10Å
C01H6sing1.09Å1.10Å
C01H7sing1.09Å1.10Å
C03H8sing1.08Å1.08Å
C04H9sing1.08Å1.08Å
C08H10sing1.09Å1.10Å
C08H11sing1.09Å1.10Å
C18H12sing1.08Å1.08Å
C19H13sing1.08Å1.08Å
C23H14sing1.08Å1.08Å
C25H15sing1.08Å1.08Å
N09H16sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C02C03119.8°119.9°
C01C02C25119.5°119.8°
C02C01H5109.5°109.5°
C02C01H6109.5°109.4°
C02C01H7109.5°109.5°
C02C03C04120.0°119.7°
C03C02C25120.7°120.3°
C02C03H8120.0°120.1°
C03C04C05118.9°119.3°
C04C03H8120.0°120.2°
C03C04H9120.5°120.3°
C20C19C18120.8°119.5°
C19C20C21117.7°119.5°
C19C20H4121.2°120.3°
C20C19H13119.6°120.2°
C19C18C17120.3°120.2°
C19C18H12119.9°119.9°
C18C19H13119.6°120.2°
C02C25N24119.3°120.6°
C02C25H15120.4°119.7°
C04C05N24120.6°119.6°
C04C05N06131.2°132.3°
C05C04H9120.6°120.3°
C20C21N22118.2°119.4°
C20C21N16122.7°119.6°
C21C20H4121.1°120.2°
C18C17N16120.0°120.7°
C18C17H3120.0°119.6°
C17C18H12119.8°119.9°
C25N24C05120.5°120.4°
C25N24C23131.7°132.6°
N24C25H15120.4°119.7°
N24C05N06108.1°108.1°
C05N24C23107.9°107.0°
C05N06C07107.6°109.1°
C17N16C21118.5°120.5°
C17N16C14120.7°119.5°
N16C17H3120.0°119.6°
N22C21N16119.1°121.0°
C21N22C12119.8°121.4°
C21N16C14120.8°120.0°
N24C23C07107.5°107.2°
N24C23H14126.2°126.4°
N06C07C23108.9°108.6°
N06C07C08125.1°125.7°
N22C12C10118.0°120.1°
N22C12C13122.2°119.8°
N16C14O15121.9°120.5°
N16C14C13119.2°119.1°
C23C07C08125.9°125.7°
C07C23H14126.2°126.4°
C07C08N09106.8°109.5°
C07C08H10110.1°109.5°
C07C08H11110.1°109.5°
C08N09C10122.5°120.0°
N09C08H10110.1°109.5°
N09C08H11110.2°109.4°
C08N09H16118.8°120.0°
N09C10C12119.1°120.0°
N09C10O11124.1°120.0°
C10N09H16118.7°120.0°
C10C12C13119.7°120.1°
C12C10O11116.7°120.0°
C12C13C14118.8°118.8°
C12C13H1120.6°120.6°
O15C14C13118.9°120.5°
C14C13H1120.6°120.6°
H5C01H6109.5°109.5°
H5C01H7109.5°109.5°
H6C01H7109.4°109.4°
H10C08H11109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C02C03C25179.8°179.7°
C01C02C03C04179.9°180.0°
C01C02C25N24179.9°179.8°
C02C01H5H6120.0°120.0°
C02C01H5H7120.0°120.0°
C02C01H6H7120.0°119.9°
C01C02C03H80.1°0.1°
C01C02C25H150.0°0.0°
C02C03C04H8180.0°179.9°
C02C03C04C050.2°0.0°
C03C02C25N240.1°0.5°
C03C02C01H590.1°89.7°
C03C02C01H6149.9°30.4°
C03C02C01H729.9°150.3°
C02C03C04H9179.8°180.0°
C03C02C25H15179.8°179.6°
C04C03C02C250.3°0.3°
C03C04C05H9180.0°180.0°
C03C04C05N240.1°0.0°
C03C04C05N06179.9°180.0°
C20C19C18H13180.0°179.8°
C19C20C21H4180.0°179.6°
C20C19C18C170.0°0.1°
C19C20C21N22179.4°179.6°
C19C20C21N160.1°0.0°
C20C19C18H12180.0°180.0°
C18C19C20C210.2°0.1°
C19C18C17H12180.0°179.9°
C19C18C17N160.3°0.1°
C19C18C17H3179.7°179.9°
C18C19C20H4179.8°179.7°
C02C25N24H15180.0°179.8°
C02C25N24C050.2°0.5°
C02C25N24C23179.6°179.8°
C25C02C01H590.1°90.0°
C25C02C01H629.9°150.0°
C25C02C01H7149.9°30.1°
C25C02C03H8179.7°179.8°
C04C05N24C250.2°0.2°
C04C05N24N06180.0°180.0°
C04C05N24C23179.8°180.0°
C04C05N06C07179.8°179.9°
C05C04C03H8179.8°180.0°
C20C21N16C170.1°0.0°
C20C21N22N16179.5°179.6°
C20C21N22C12179.4°180.0°
C20C21N16C14179.7°180.0°
C21C20C19H13179.8°180.0°
C18C17N16H3180.0°180.0°
C18C17N16C210.3°0.0°
C18C17N16C14179.5°180.0°
C17C18C19H13180.0°180.0°
C25N24C05C23179.6°179.8°
C25N24C05N06179.8°179.8°
C25N24C23C07180.0°179.8°
C25N24C23H140.0°0.2°
N24C05N06C070.2°0.0°
C05N24C23C070.5°0.0°
N24C05C04H9179.9°180.0°
C05N24C23H14179.5°180.0°
C05N24C25H15179.9°179.7°
N06C05N24C230.2°0.0°
C05N06C07C230.5°0.0°
C05N06C07C08179.9°180.0°
N06C05C04H90.1°0.0°
C17N16C21N22179.6°179.7°
C17N16C21C14179.8°179.9°
C17N16C14O150.9°0.1°
C17N16C14C13179.6°180.0°
N16C17C18H12179.7°179.9°
N22C21N16C140.2°0.4°
C21N22C12C10178.8°179.9°
C21N22C12C131.9°0.0°
N22C21C20H40.6°0.0°
N16C21N22C121.0°0.4°
C21N16C14O15179.3°180.0°
C21N16C14C130.2°0.0°
C21N16C17H3179.6°180.0°
N16C21C20H4179.9°179.6°
N24C23C07N060.6°0.0°
N24C23C07H14180.0°180.0°
N24C23C07C08179.8°180.0°
C23N24C25H150.4°0.1°
N06C07C23C08179.6°179.9°
N06C07C08N0972.9°85.0°
N06C07C08H1046.7°35.0°
N06C07C08H11167.5°155.0°
N06C07C23H14179.4°180.0°
N22C12C10N092.5°0.3°
N22C12C10C13176.9°180.0°
N22C12C13C141.9°0.3°
N22C12C10O11174.2°180.0°
N22C12C13H1178.1°180.0°
N16C14C13C121.0°0.3°
N16C14O15C13179.5°179.9°
N16C14C13H1179.0°180.0°
C14N16C17H30.5°0.0°
C23C07C08N09106.7°95.0°
C23C07C08H10133.8°145.0°
C23C07C08H1112.9°24.9°
C07C08N09H10119.6°120.0°
C07C08N09H11119.6°120.0°
C07C08N09C10146.2°180.0°
C07C08H10H11121.2°120.0°
C08C07C23H140.2°0.0°
C07C08N09H1633.8°0.0°
C08N09C10H16180.0°180.0°
C08N09C10C12178.2°179.7°
C08N09C10O111.8°0.0°
N09C08H10H11121.3°120.0°
N09C10C12O11176.7°179.7°
N09C10C12C13179.4°179.7°
C10N09C08H1094.2°60.0°
C10N09C08H1126.6°60.0°
C10C12C13C14178.7°179.7°
C10C12C13H11.3°0.0°
C12C10N09H161.8°0.3°
C12C13C14O15178.5°179.7°
C12C13C14H1180.0°179.7°
C13C12C10O112.7°0.0°
O15C14C13H11.5°0.1°
O11C10N09H16178.2°180.0°
H3C17C18H120.3°0.1°
H4C20C19H130.2°0.5°
H5C01H6H7120.0°120.0°
H8C03C04H90.2°0.0°
H10C08N09H1685.7°120.0°
H11C08N09H16153.4°120.0°
H12C18C19H130.1°0.1°

246704

PDB entries from 2025-12-24

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