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UPG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.35Å1.40Å
N1C6sing1.37Å1.38Å
N1C1Csing1.47Å1.48Å
C2N3sing1.35Å1.37Å
C2O2doub1.22Å1.24Å
N3C4sing1.35Å1.40Å
N3HN3sing0.97Å1.00Å
C4C5sing1.41Å1.43Å
C4O4doub1.22Å1.22Å
C5C6doub1.35Å1.32Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C1CC2Csing1.55Å1.52Å
C1CO4Csing1.44Å1.39Å
C1CH1Csing1.09Å1.10Å
C2CO2Csing1.43Å1.45Å
C2CC3Csing1.55Å1.55Å
C2CH2Csing1.09Å1.10Å
O2CHO2Csing0.97Å0.95Å
C3CC4Csing1.54Å1.52Å
C3CO3Csing1.43Å1.44Å
C3CH3Csing1.09Å1.10Å
C4CO4Csing1.44Å1.47Å
C4CC5Csing1.53Å1.50Å
C4CH4Csing1.09Å1.10Å
O3CHO3Csing0.97Å0.95Å
C5CO5Csing1.43Å1.43Å
C5CH5C1sing1.09Å1.10Å
C5CH5C2sing1.09Å1.10Å
O5CPAsing1.61Å1.59Å
PAO1Adoub1.48Å1.47Å
PAO2Asing1.61Å1.48Å
PAO3Asing1.61Å1.64Å
O2AHOA2sing0.97Å0.95Å
O3APBsing1.61Å1.58Å
PBO1Bdoub1.48Å1.46Å
PBO2Bsing1.61Å1.50Å
PBO3Bsing1.61Å1.64Å
O2BHOB2sing0.97Å0.95Å
O3BC1'sing1.43Å1.39Å
C1'C2'sing1.53Å1.54Å
C1'O5'sing1.43Å1.45Å
C1'H1'sing1.09Å1.10Å
C2'C3'sing1.53Å1.51Å
C2'O2'sing1.43Å1.44Å
C2'H2'sing1.09Å1.10Å
C3'C4'sing1.53Å1.52Å
C3'O3'sing1.43Å1.44Å
C3'H3'sing1.09Å1.10Å
C4'C5'sing1.53Å1.53Å
C4'O4'sing1.43Å1.43Å
C4'H4'sing1.09Å1.10Å
C5'C6'sing1.53Å1.52Å
C5'O5'sing1.43Å1.44Å
C5'H5'sing1.09Å1.10Å
C6'O6'sing1.43Å1.45Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O3'HO3'sing0.97Å0.95Å
O4'HO4'sing0.97Å0.95Å
O6'HO6'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6121.6°120.6°
C2N1C1C119.2°119.7°
N1C2N3114.5°120.9°
N1C2O2124.0°119.6°
C6N1C1C119.2°119.7°
N1C6C5122.1°119.7°
N1C6H6119.0°120.1°
N1C1CC2C115.2°110.6°
N1C1CO4C108.8°110.6°
N1C1CH1C108.4°110.5°
N3C2O2121.5°119.5°
C2N3C4126.6°120.2°
C2N3HN3116.7°119.9°
C4N3HN3116.7°119.9°
N3C4C5114.2°119.4°
N3C4O4119.7°120.2°
C5C4O4126.1°120.3°
C4C5C6121.0°119.1°
C4C5H5119.5°120.4°
C6C5H5119.5°120.4°
C5C6H6118.9°120.2°
C2CC1CO4C106.8°103.5°
C2CC1CH1C107.9°110.6°
C1CC2CO2C111.0°110.9°
C1CC2CC3C102.5°102.1°
C1CC2CH2C109.9°110.9°
O4CC1CH1C109.7°110.8°
C1CO4CC4C110.0°107.0°
O2CC2CC3C112.8°110.9°
O2CC2CH2C110.8°110.8°
C2CO2CHO2C109.5°114.1°
C3CC2CH2C109.6°110.9°
C2CC3CC4C101.5°104.2°
C2CC3CO3C113.4°110.5°
C2CC3CH3C109.4°110.5°
C4CC3CO3C111.6°110.5°
C4CC3CH3C109.7°110.5°
C3CC4CO4C107.1°107.3°
C3CC4CC5C114.6°109.9°
C3CC4CH4C108.2°109.9°
O3CC3CH3C110.9°110.6°
C3CO3CHO3C109.5°114.0°
O4CC4CC5C109.5°109.9°
O4CC4CH4C108.9°109.9°
C5CC4CH4C108.4°110.0°
C4CC5CO5C105.9°109.5°
C4CC5CH5C1110.4°109.5°
C4CC5CH5C2110.4°109.5°
O5CC5CH5C1110.3°109.4°
O5CC5CH5C2110.4°109.4°
C5CO5CPA119.0°123.0°
H5C1C5CH5C2109.4°109.5°
O5CPAO1A114.1°109.4°
O5CPAO2A110.0°109.5°
O5CPAO3A103.5°109.5°
O1APAO2A114.9°109.5°
O1APAO3A102.0°109.5°
O2APAO3A111.5°109.5°
PAO2AHOA2109.5°114.0°
PAO3APB131.7°134.0°
O3APBO1B112.6°109.5°
O3APBO2B104.0°109.5°
O3APBO3B105.6°109.5°
O1BPBO2B116.1°109.5°
O1BPBO3B106.8°109.5°
O2BPBO3B111.3°109.4°
PBO2BHOB2109.5°114.0°
PBO3BC1'119.4°123.0°
O3BC1'C2'109.3°109.5°
O3BC1'O5'106.4°109.5°
O3BC1'H1'111.5°109.5°
C2'C1'O5'109.4°109.4°
C2'C1'H1'109.4°109.5°
C1'C2'C3'108.3°109.2°
C1'C2'O2'115.2°109.5°
C1'C2'H2'108.4°109.5°
O5'C1'H1'110.7°109.5°
C1'O5'C5'112.9°114.1°
C3'C2'O2'106.3°109.5°
C3'C2'H2'108.8°109.5°
C2'C3'C4'111.5°109.0°
C2'C3'O3'109.1°109.5°
C2'C3'H3'109.2°109.5°
O2'C2'H2'109.7°109.5°
C2'O2'HO2'109.5°114.0°
C4'C3'O3'107.8°109.6°
C4'C3'H3'109.1°109.6°
C3'C4'C5'110.0°109.2°
C3'C4'O4'109.5°109.5°
C3'C4'H4'109.5°109.5°
O3'C3'H3'110.2°109.6°
C3'O3'HO3'109.5°114.0°
C5'C4'O4'107.8°109.5°
C5'C4'H4'109.3°109.5°
C4'C5'C6'112.1°109.5°
C4'C5'O5'111.9°109.4°
C4'C5'H5'109.0°109.5°
O4'C4'H4'110.7°109.6°
C4'O4'HO4'109.5°114.0°
C6'C5'O5'104.4°109.5°
C6'C5'H5'109.2°109.5°
C5'C6'O6'105.3°109.4°
C5'C6'H6'1110.5°109.5°
C5'C6'H6'2110.5°109.5°
O5'C5'H5'110.2°109.5°
O6'C6'H6'1110.5°109.4°
O6'C6'H6'2110.5°109.5°
C6'O6'HO6'109.5°114.0°
H6'1C6'H6'2109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1C177.8°179.8°
N1C2N3O2179.2°179.9°
N1C2N3C41.0°0.0°
N1C2N3HN3179.0°180.0°
C2N1C6C51.3°0.0°
C2N1C6H6178.7°180.0°
C2N1C1CC2C117.8°114.9°
C2N1C1CO4C122.4°131.0°
C2N1C1CH1C3.2°7.9°
C6N1C2N31.4°0.1°
C6N1C2O2179.4°180.0°
N1C6C5C40.6°0.0°
N1C6C5H6180.0°179.9°
N1C6C5H5179.4°180.0°
C6N1C1CC2C64.3°65.3°
C6N1C1CO4C55.5°48.8°
C6N1C1CH1C174.7°171.9°
C1CN1C2N3176.4°179.7°
C1CN1C2O22.7°0.2°
C1CN1C6C5176.5°179.7°
C1CN1C6H63.5°0.2°
N1C1CC2CO4C120.9°118.5°
N1C1CC2CH1C121.3°122.8°
N1C1CO4CH1C118.4°122.9°
N1C1CC2CO2C85.7°86.3°
N1C1CC2CC3C153.6°155.5°
N1C1CC2CH2C37.2°37.3°
N1C1CO4CC4C143.2°158.6°
C2N3C4HN3180.0°179.9°
C2N3C4C50.3°0.0°
C2N3C4O4178.8°179.9°
O2C2N3C4179.8°179.9°
O2C2N3HN30.2°0.1°
N3C4C5O4179.1°179.9°
N3C4C5C60.1°0.0°
N3C4C5H5179.9°180.0°
HN3N3C4C5179.6°179.9°
HN3N3C4O41.2°0.0°
C4C5C6H5180.0°180.0°
C4C5C6H6179.4°180.0°
O4C4C5C6179.0°179.9°
O4C4C5H51.0°0.0°
H5C5C6H60.6°0.1°
C2CC1CO4CH1C116.6°118.5°
C1CC2CO2CC3C114.4°112.7°
C1CC2CO2CH2C122.4°123.7°
C1CC2CC3CH2C116.6°118.2°
C1CC2CO2CHO2C180.0°180.0°
C1CC2CC3CC4C33.3°20.9°
C1CC2CC3CO3C86.4°97.8°
C1CC2CC3CH3C149.2°139.5°
C2CC1CO4CC4C18.2°40.1°
O4CC1CC2CO2C153.3°155.2°
O4CC1CC2CC3C32.7°37.0°
O4CC1CC2CH2C83.7°81.2°
C1CO4CC4CC3C4.1°26.5°
C1CO4CC4CC5C120.6°145.9°
C1CO4CC4CH4C120.9°92.9°
H1CC1CC2CO2C35.6°36.6°
H1CC1CC2CC3C85.1°81.6°
H1CC1CC2CH2C158.5°160.1°
H1CC1CO4CC4C98.4°78.5°
O2CC2CC3CH2C124.0°123.5°
O2CC2CC3CC4C152.7°139.1°
O2CC2CC3CO3C32.9°20.4°
O2CC2CC3CH3C91.4°102.3°
C3CC2CO2CHO2C65.6°67.2°
C2CC3CC4CO3C121.1°118.7°
C2CC3CC4CH3C115.6°118.7°
C2CC3CO3CH3C123.6°122.7°
C2CC3CC4CO4C23.8°2.0°
C2CC3CC4CC5C97.8°121.4°
C2CC3CC4CH4C141.1°117.4°
C2CC3CO3CHO3C180.0°61.4°
H2CC2CO2CHO2C57.6°56.4°
H2CC2CC3CC4C83.3°97.4°
H2CC2CC3CO3C156.9°144.0°
H2CC2CC3CH3C32.6°21.3°
C4CC3CO3CH3C122.6°122.6°
C3CC4CO4CC5C124.8°119.4°
C3CC4CO4CH4C116.8°119.4°
C3CC4CC5CH4C121.0°121.1°
C4CC3CO3CHO3C66.2°176.2°
C3CC4CC5CO5C54.5°175.0°
C3CC4CC5CH5C1173.9°55.0°
C3CC4CC5CH5C265.0°65.0°
O3CC3CC4CO4C97.3°120.7°
O3CC3CC4CC5C141.1°119.9°
O3CC3CC4CH4C20.0°1.3°
H3CC3CC4CO4C139.4°116.6°
H3CC3CC4CC5C17.8°2.8°
H3CC3CC4CH4C103.3°123.9°
H3CC3CO3CHO3C56.4°61.2°
O4CC4CC5CH4C118.7°121.1°
O4CC4CC5CO5C65.8°67.2°
O4CC4CC5CH5C153.7°172.8°
O4CC4CC5CH5C2174.8°52.8°
C4CC5CO5CH5C1119.5°120.0°
C4CC5CO5CH5C2119.5°120.0°
C4CC5CH5C1H5C2121.6°120.1°
C4CC5CO5CPA173.4°180.0°
H4CC4CC5CO5C175.5°53.9°
H4CC4CC5CH5C165.1°66.0°
H4CC4CC5CH5C256.0°173.9°
O5CC5CH5C1H5C2121.6°119.9°
C5CO5CPAO1A50.2°55.0°
C5CO5CPAO2A178.9°65.0°
C5CO5CPAO3A59.7°175.0°
H5C1C5CO5CPA53.9°60.0°
H5C2C5CO5CPA67.1°60.0°
O5CPAO1AO2A128.4°120.0°
O5CPAO1AO3A110.8°120.0°
O5CPAO2AO3A114.2°120.1°
O5CPAO2AHOA2130.4°60.0°
O5CPAO3APB67.1°160.0°
O1APAO2AO3A115.4°120.0°
O1APAO2AHOA20.0°180.0°
O1APAO3APB174.2°40.0°
O2APAO3APB51.1°80.0°
O3APAO2AHOA2115.4°60.0°
PAO3APBO1B13.9°45.0°
PAO3APBO2B112.7°75.0°
PAO3APBO3B130.0°165.0°
O3APBO1BO2B119.7°120.0°
O3APBO1BO3B115.4°120.0°
O3APBO2BO3B113.2°120.0°
O3APBO2BHOB2124.3°60.0°
O3APBO3BC1'28.8°175.0°
O1BPBO2BO3B122.5°120.0°
O1BPBO2BHOB20.0°180.0°
O1BPBO3BC1'148.9°55.0°
O2BPBO3BC1'83.4°65.0°
O3BPBO2BHOB2122.5°60.0°
PBO3BC1'C2'137.2°150.1°
PBO3BC1'O5'104.8°90.0°
PBO3BC1'H1'16.1°30.0°
O3BC1'C2'O5'116.1°120.0°
O3BC1'C2'H1'122.4°120.1°
O3BC1'O5'H1'121.4°120.0°
O3BC1'C2'C3'56.1°62.3°
O3BC1'C2'O2'62.7°57.5°
O3BC1'C2'H2'173.9°177.7°
O3BC1'O5'C5'56.5°58.8°
C2'C1'O5'H1'120.7°120.0°
C1'C2'C3'O2'124.3°119.9°
C1'C2'C3'H2'117.6°120.0°
C1'C2'O2'H2'122.6°120.2°
C1'C2'C3'C4'57.2°57.0°
C1'C2'C3'O3'176.1°176.9°
C1'C2'C3'H3'63.4°62.9°
C2'C1'O5'C5'61.5°61.2°
C1'C2'O2'HO2'180.0°60.0°
O5'C1'C2'C3'60.0°57.6°
O5'C1'C2'O2'178.9°177.5°
O5'C1'C2'H2'57.8°62.3°
C1'O5'C5'C4'57.6°61.2°
C1'O5'C5'C6'179.0°178.9°
C1'O5'C5'H5'63.8°58.8°
H1'C1'C2'C3'178.5°177.6°
H1'C1'C2'O2'59.7°62.5°
H1'C1'C2'H2'63.7°57.6°
H1'C1'O5'C5'177.9°178.9°
C3'C2'O2'H2'117.5°120.1°
C2'C3'C4'O3'119.7°119.8°
C2'C3'C4'H3'120.6°119.8°
C2'C3'O3'H3'119.8°120.2°
C2'C3'C4'C5'53.1°57.0°
C2'C3'C4'O4'171.4°176.9°
C2'C3'C4'H4'67.0°62.9°
C3'C2'O2'HO2'60.1°179.7°
C2'C3'O3'HO3'180.0°60.0°
O2'C2'C3'C4'178.5°176.9°
O2'C2'C3'O3'59.6°63.2°
O2'C2'C3'H3'60.9°57.0°
H2'C2'C3'C4'60.4°62.9°
H2'C2'C3'O3'58.5°56.9°
H2'C2'C3'H3'179.0°177.2°
H2'C2'O2'HO2'57.4°60.2°
C4'C3'O3'H3'118.9°120.3°
C3'C4'C5'O4'119.3°119.9°
C3'C4'C5'H4'120.2°119.9°
C3'C4'O4'H4'120.8°120.2°
C3'C4'C5'C6'168.8°177.6°
C3'C4'C5'O5'51.8°57.6°
C3'C4'C5'H5'70.3°62.4°
C4'C3'O3'HO3'58.8°179.6°
C3'C4'O4'HO4'180.0°60.0°
O3'C3'C4'C5'172.8°176.8°
O3'C3'C4'O4'68.9°63.3°
O3'C3'C4'H4'52.7°56.9°
H3'C3'C4'C5'67.6°62.9°
H3'C3'C4'O4'50.8°57.1°
H3'C3'C4'H4'172.3°177.3°
H3'C3'O3'HO3'60.1°60.2°
C5'C4'O4'H4'119.5°120.1°
C4'C5'C6'O5'121.3°119.9°
C4'C5'C6'H5'120.8°120.0°
C4'C5'O5'H5'121.4°120.0°
C4'C5'C6'O6'174.9°175.0°
C4'C5'C6'H6'155.5°55.1°
C4'C5'C6'H6'265.8°65.0°
C5'C4'O4'HO4'60.4°179.7°
O4'C4'C5'C6'71.9°62.5°
O4'C4'C5'O5'171.2°177.5°
O4'C4'C5'H5'49.1°57.5°
H4'C4'C5'C6'48.5°57.7°
H4'C4'C5'O5'68.4°62.3°
H4'C4'C5'H5'169.5°177.7°
H4'C4'O4'HO4'59.2°60.2°
C6'C5'O5'H5'117.1°120.0°
C5'C6'O6'H6'1119.3°119.9°
C5'C6'O6'H6'2119.4°120.0°
C5'C6'H6'1H6'2121.9°120.0°
C5'C6'O6'HO6'180.0°179.9°
O5'C5'C6'O6'63.8°65.1°
O5'C5'C6'H6'1176.8°175.0°
O5'C5'C6'H6'255.5°54.9°
H5'C5'C6'O6'54.0°55.0°
H5'C5'C6'H6'165.3°65.0°
H5'C5'C6'H6'2173.4°175.0°
O6'C6'H6'1H6'2121.9°120.1°
H6'1C6'O6'HO6'60.7°60.1°
H6'2C6'O6'HO6'60.6°59.9°

218853

PDB entries from 2024-04-24

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