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Summary Geometry Related PDB entries

UL9

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
S06	C05	doub	1.55Å	1.81Å
C05	N04	doub	1.25Å	1.45Å
N04	C03	sing	1.46Å	1.61Å
C03	C02	sing	1.51Å	1.71Å
C02	C01	doub	1.31Å	1.32Å
C01	H012	sing	1.08Å	1.08Å
C01	H011	sing	1.08Å	1.08Å
C02	H021	sing	1.08Å	1.08Å
C03	H031	sing	1.09Å	1.10Å
C03	H032	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S06	C05	N04	179.9°	180.0°
C05	N04	C03	119.8°	120.0°
N04	C03	C02	109.7°	109.5°
N04	C03	H031	109.4°	109.5°
N04	C03	H032	109.4°	109.5°
C03	C02	C01	120.1°	120.0°
C03	C02	H021	120.0°	120.0°
C02	C03	H031	109.4°	109.5°
C02	C03	H032	109.4°	109.5°
C02	C01	H012	120.0°	120.0°
C02	C01	H011	120.0°	120.0°
C01	C02	H021	120.0°	120.0°
H012	C01	H011	120.0°	120.0°
H031	C03	H032	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S06	C05	N04	C03	5.1°	99.2°
C05	N04	C03	C02	177.6°	120.0°
C05	N04	C03	H031	62.3°	0.0°
C05	N04	C03	H032	57.6°	120.0°
N04	C03	C02	H031	120.0°	120.1°
N04	C03	C02	H032	120.1°	120.0°
N04	C03	C02	C01	67.1°	125.0°
N04	C03	C02	H021	113.0°	55.0°
N04	C03	H031	H032	119.9°	120.0°
C03	C02	C01	H021	180.0°	180.0°
C03	C02	C01	H012	0.0°	0.0°
C03	C02	C01	H011	180.0°	179.8°
C02	C03	H031	H032	119.9°	119.9°
C02	C01	H012	H011	180.0°	179.8°
C01	C02	C03	H031	53.0°	114.9°
C01	C02	C03	H032	172.9°	5.0°
H012	C01	C02	H021	180.0°	NaN°
H011	C01	C02	H021	0.0°	0.2°
H021	C02	C03	H031	127.0°	65.1°
H021	C02	C03	H032	7.1°	175.0°

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PDB entries from 2026-01-14

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