U48
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.22Å | |
| N3 | C2 | sing | 1.33Å | 1.38Å | |
| N3 | C4 | doub | 1.33Å | 1.38Å | |
| C2 | N1 | sing | 1.35Å | 1.40Å | |
| N4 | C4 | sing | 1.38Å | 1.36Å | |
| C4 | C5 | sing | 1.41Å | 1.45Å | |
| N1 | C1' | sing | 1.47Å | 1.48Å | |
| N1 | C6 | sing | 1.36Å | 1.42Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C5 | C6 | doub | 1.35Å | 1.44Å | |
| C5 | C5M | sing | 1.51Å | 1.52Å | |
| C3' | C4' | sing | 1.55Å | 1.55Å | |
| C4' | C5' | sing | 1.53Å | 1.55Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| O5' | P | sing | 1.61Å | 1.64Å | |
| P | OP1 | doub | 1.48Å | 1.50Å | |
| P | OP2 | sing | 1.61Å | 1.50Å | |
| P | O1 | sing | 1.61Å | 1.64Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| OP2 | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H3T | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C5M | H53 | sing | 1.09Å | 1.10Å | |
| C5M | H51 | sing | 1.09Å | 1.10Å | |
| C5M | H52 | sing | 1.09Å | 1.10Å | |
| N4 | H41 | sing | 0.97Å | 1.00Å | |
| N4 | H42 | sing | 0.97Å | 1.00Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O1 | H4 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 119.9° | 119.5° |
| O2 | C2 | N1 | 123.5° | 119.4° |
| C2 | N3 | C4 | 124.8° | 120.7° |
| N3 | C2 | N1 | 116.6° | 121.1° |
| C2 | N3 | H3 | 117.6° | 119.6° |
| N3 | C4 | N4 | 116.6° | 120.2° |
| N3 | C4 | C5 | 120.9° | 119.6° |
| C4 | N3 | H3 | 117.6° | 119.7° |
| C2 | N1 | C1' | 119.1° | 119.8° |
| C2 | N1 | C6 | 120.9° | 120.3° |
| N4 | C4 | C5 | 122.5° | 120.2° |
| C4 | N4 | H41 | 120.0° | 120.0° |
| C4 | N4 | H42 | 120.0° | 120.0° |
| C4 | C5 | C6 | 114.0° | 119.0° |
| C4 | C5 | C5M | 123.3° | 120.5° |
| C1' | N1 | C6 | 120.0° | 119.8° |
| N1 | C1' | O4' | 111.6° | 109.9° |
| N1 | C1' | C2' | 115.3° | 109.9° |
| N1 | C1' | H1' | 108.5° | 110.0° |
| N1 | C6 | C5 | 122.8° | 119.3° |
| N1 | C6 | H6 | 118.6° | 120.4° |
| O4' | C1' | C2' | 104.2° | 107.3° |
| C1' | O4' | C4' | 111.5° | 106.9° |
| O4' | C1' | H1' | 109.1° | 110.0° |
| C1' | C2' | C3' | 102.7° | 104.2° |
| C1' | C2' | H2' | 111.1° | 110.6° |
| C1' | C2' | H2'' | 111.1° | 110.5° |
| C2' | C1' | H1' | 107.9° | 109.8° |
| O3' | C3' | C2' | 109.5° | 110.9° |
| O3' | C3' | C4' | 110.5° | 110.9° |
| O3' | C3' | H3' | 112.0° | 110.8° |
| C3' | O3' | H3T | 109.5° | 114.0° |
| O4' | C4' | C3' | 105.3° | 103.6° |
| O4' | C4' | C5' | 107.6° | 110.6° |
| O4' | C4' | H4' | 111.4° | 110.6° |
| C2' | C3' | C4' | 103.9° | 102.1° |
| C2' | C3' | H3' | 110.4° | 111.0° |
| C3' | C2' | H2' | 111.1° | 110.5° |
| C3' | C2' | H2'' | 111.1° | 110.5° |
| C6 | C5 | C5M | 122.7° | 120.5° |
| C5 | C6 | H6 | 118.6° | 120.4° |
| C5 | C5M | H53 | 109.5° | 109.5° |
| C5 | C5M | H51 | 109.4° | 109.5° |
| C5 | C5M | H52 | 109.5° | 109.5° |
| C3' | C4' | C5' | 112.5° | 110.6° |
| C3' | C4' | H4' | 110.0° | 110.6° |
| C4' | C3' | H3' | 110.2° | 110.9° |
| C4' | C5' | O5' | 110.9° | 109.5° |
| C4' | C5' | H5' | 109.1° | 109.5° |
| C4' | C5' | H5'' | 109.1° | 109.4° |
| C5' | C4' | H4' | 110.0° | 110.6° |
| C5' | O5' | P | 120.0° | 123.0° |
| O5' | C5' | H5' | 109.1° | 109.5° |
| O5' | C5' | H5'' | 109.1° | 109.5° |
| O5' | P | OP1 | 111.2° | 109.5° |
| O5' | P | OP2 | 112.3° | 109.4° |
| O5' | P | O1 | 98.6° | 109.5° |
| OP1 | P | OP2 | 113.3° | 109.5° |
| OP1 | P | O1 | 110.2° | 109.5° |
| OP2 | P | O1 | 110.4° | 109.5° |
| P | OP2 | H2 | 109.5° | 114.0° |
| P | O1 | H4 | 109.5° | 114.0° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
| H2' | C2' | H2'' | 109.5° | 110.4° |
| H53 | C5M | H51 | 109.5° | 109.4° |
| H53 | C5M | H52 | 109.4° | 109.5° |
| H51 | C5M | H52 | 109.5° | 109.4° |
| H41 | N4 | H42 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 178.8° | 179.8° |
| O2 | C2 | N3 | C4 | 179.0° | 179.7° |
| O2 | C2 | N1 | C1' | 0.2° | 0.1° |
| O2 | C2 | N1 | C6 | 178.9° | 180.0° |
| O2 | C2 | N3 | H3 | 1.0° | 0.2° |
| C2 | N3 | C4 | H3 | 180.0° | 180.0° |
| C2 | N3 | C4 | N4 | 177.4° | 179.7° |
| C2 | N3 | C4 | C5 | 1.8° | 0.0° |
| N3 | C2 | N1 | C1' | 178.5° | 179.7° |
| N3 | C2 | N1 | C6 | 2.3° | 0.2° |
| C4 | N3 | C2 | N1 | 0.2° | 0.1° |
| N3 | C4 | N4 | C5 | 179.2° | 179.7° |
| N3 | C4 | C5 | C6 | 1.5° | 0.3° |
| N3 | C4 | C5 | C5M | 179.1° | 179.7° |
| N3 | C4 | N4 | H41 | 179.2° | 179.7° |
| N3 | C4 | N4 | H42 | 0.8° | 0.3° |
| C2 | N1 | C1' | C6 | 179.2° | 179.9° |
| C2 | N1 | C1' | O4' | 142.2° | 53.5° |
| C2 | N1 | C1' | C2' | 99.2° | 64.4° |
| C2 | N1 | C6 | C5 | 2.5° | 0.5° |
| C2 | N1 | C6 | H6 | 177.5° | 179.9° |
| C2 | N1 | C1' | H1' | 21.9° | 174.6° |
| N1 | C2 | N3 | H3 | 179.8° | 180.0° |
| N4 | C4 | C5 | C6 | 177.7° | 180.0° |
| N4 | C4 | C5 | C5M | 1.7° | 0.0° |
| C4 | N4 | H41 | H42 | 180.0° | 180.0° |
| N4 | C4 | N3 | H3 | 2.5° | 0.3° |
| C4 | C5 | C6 | N1 | 0.6° | 0.6° |
| C4 | C5 | C6 | C5M | 179.4° | 180.0° |
| C4 | C5 | C6 | H6 | 179.4° | 180.0° |
| C4 | C5 | C5M | H53 | 180.0° | 0.0° |
| C4 | C5 | C5M | H51 | 60.0° | 120.0° |
| C4 | C5 | C5M | H52 | 60.0° | 120.0° |
| C5 | C4 | N4 | H41 | 0.0° | 0.0° |
| C5 | C4 | N4 | H42 | 180.0° | 180.0° |
| C5 | C4 | N3 | H3 | 178.2° | 180.0° |
| N1 | C1' | O4' | C2' | 125.1° | 119.5° |
| N1 | C1' | O4' | H1' | 119.9° | 121.2° |
| N1 | C1' | C2' | H1' | 121.4° | 121.1° |
| N1 | C1' | O4' | C4' | 150.0° | 145.9° |
| N1 | C1' | C2' | C3' | 157.4° | 121.5° |
| C1' | N1 | C6 | C5 | 178.3° | 179.4° |
| C1' | N1 | C6 | H6 | 1.7° | 0.0° |
| N1 | C1' | C2' | H2' | 83.7° | 2.8° |
| N1 | C1' | C2' | H2'' | 38.5° | 119.8° |
| C6 | N1 | C1' | O4' | 38.7° | 126.5° |
| C6 | N1 | C1' | C2' | 80.0° | 115.7° |
| N1 | C6 | C5 | H6 | 180.0° | 179.4° |
| N1 | C6 | C5 | C5M | 178.8° | 179.5° |
| C6 | N1 | C1' | H1' | 158.9° | 5.3° |
| O4' | C1' | C2' | H1' | 115.9° | 119.5° |
| O4' | C1' | C2' | C3' | 34.7° | 2.1° |
| C1' | O4' | C4' | C3' | 4.6° | 40.0° |
| C1' | O4' | C4' | C5' | 124.8° | 158.6° |
| C1' | O4' | C4' | H4' | 114.6° | 78.5° |
| O4' | C1' | C2' | H2' | 153.6° | 116.6° |
| O4' | C1' | C2' | H2'' | 84.2° | 120.8° |
| C1' | C2' | C3' | O3' | 86.4° | 139.0° |
| C2' | C1' | O4' | C4' | 24.9° | 26.5° |
| C1' | C2' | C3' | H2' | 118.9° | 118.8° |
| C1' | C2' | C3' | H2'' | 118.9° | 118.8° |
| C1' | C2' | C3' | C4' | 31.7° | 20.8° |
| C1' | C2' | C3' | H3' | 149.8° | 97.4° |
| C1' | C2' | H2' | H2'' | 123.1° | 122.6° |
| O3' | C3' | C4' | O4' | 99.8° | 155.2° |
| O3' | C3' | C2' | C4' | 118.1° | 118.2° |
| O3' | C3' | C2' | H3' | 123.8° | 123.6° |
| O3' | C3' | C4' | H3' | 124.3° | 123.5° |
| O3' | C3' | C4' | C5' | 143.3° | 86.3° |
| O3' | C3' | C4' | H4' | 20.4° | 36.6° |
| O3' | C3' | C2' | H2' | 32.5° | 102.3° |
| O3' | C3' | C2' | H2'' | 154.7° | 20.2° |
| O4' | C4' | C3' | C2' | 17.6° | 37.0° |
| O4' | C4' | C3' | C5' | 116.9° | 118.5° |
| O4' | C4' | C3' | H4' | 120.1° | 118.6° |
| O4' | C4' | C5' | H4' | 121.5° | 122.9° |
| O4' | C4' | C5' | O5' | 70.1° | 68.6° |
| O4' | C4' | C5' | H5' | 169.7° | 51.4° |
| O4' | C4' | C5' | H5'' | 50.1° | 171.4° |
| O4' | C4' | C3' | H3' | 135.9° | 81.3° |
| C4' | O4' | C1' | H1' | 90.1° | 92.9° |
| C2' | C3' | C4' | H3' | 118.3° | 118.3° |
| C2' | C3' | C4' | C5' | 99.3° | 155.5° |
| C2' | C3' | C4' | H4' | 137.7° | 81.6° |
| C2' | C3' | O3' | H3T | 180.0° | 67.3° |
| C3' | C2' | H2' | H2'' | 123.1° | 122.6° |
| C3' | C2' | C1' | H1' | 81.2° | 117.4° |
| C6 | C5 | C5M | H53 | 0.7° | 179.9° |
| C6 | C5 | C5M | H51 | 120.6° | 60.0° |
| C6 | C5 | C5M | H52 | 119.3° | 60.0° |
| C5M | C5 | C6 | H6 | 1.2° | 0.0° |
| C5 | C5M | H53 | H51 | 120.0° | 120.0° |
| C5 | C5M | H53 | H52 | 120.0° | 120.1° |
| C5 | C5M | H51 | H52 | 120.0° | 120.0° |
| C3' | C4' | C5' | H4' | 123.0° | 122.9° |
| C3' | C4' | C5' | O5' | 174.3° | 177.2° |
| C3' | C4' | C5' | H5' | 54.1° | 62.8° |
| C3' | C4' | C5' | H5'' | 65.4° | 57.2° |
| C4' | C3' | O3' | H3T | 66.1° | 180.0° |
| C4' | C3' | C2' | H2' | 150.6° | 139.6° |
| C4' | C3' | C2' | H2'' | 87.2° | 97.9° |
| C4' | C5' | O5' | H5' | 120.2° | 120.0° |
| C4' | C5' | O5' | H5'' | 120.2° | 119.9° |
| C4' | C5' | O5' | P | 81.4° | 179.9° |
| C4' | C5' | H5' | H5'' | 119.3° | 120.0° |
| C5' | C4' | C3' | H3' | 19.0° | 37.3° |
| C5' | O5' | P | OP1 | 23.7° | 55.0° |
| C5' | O5' | P | OP2 | 151.8° | 65.0° |
| C5' | O5' | P | O1 | 92.0° | 175.0° |
| O5' | C5' | H5' | H5'' | 119.4° | 120.0° |
| O5' | C5' | C4' | H4' | 51.4° | 54.3° |
| O5' | P | OP1 | OP2 | 127.5° | 120.0° |
| O5' | P | OP1 | O1 | 108.3° | 120.0° |
| O5' | P | OP2 | O1 | 108.9° | 120.0° |
| O5' | P | OP2 | H2 | 127.0° | 60.0° |
| P | O5' | C5' | H5' | 38.7° | 60.0° |
| P | O5' | C5' | H5'' | 158.4° | 60.0° |
| O5' | P | O1 | H4 | 116.5° | 180.0° |
| OP1 | P | OP2 | O1 | 124.1° | 120.0° |
| OP1 | P | OP2 | H2 | 0.0° | 180.0° |
| OP1 | P | O1 | H4 | 0.0° | 60.0° |
| OP2 | P | O1 | H4 | 125.8° | 60.0° |
| O1 | P | OP2 | H2 | 124.2° | 60.0° |
| H5' | C5' | C4' | H4' | 68.9° | 174.3° |
| H5'' | C5' | C4' | H4' | 171.6° | 65.7° |
| H4' | C4' | C3' | H3' | 104.0° | 160.1° |
| H3' | C3' | O3' | H3T | 57.2° | 56.4° |
| H3' | C3' | C2' | H2' | 91.3° | 21.3° |
| H3' | C3' | C2' | H2'' | 30.9° | 143.8° |
| H2' | C2' | C1' | H1' | 37.7° | 123.9° |
| H2'' | C2' | C1' | H1' | 159.9° | 1.3° |
| H53 | C5M | H51 | H52 | 120.0° | 119.9° |
