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SSJ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.41Å
C2O2doub1.22Å1.25Å
C2N3sing1.34Å1.33Å
N3HN3sing0.97Å1.00Å
C4N3sing1.35Å1.34Å
C4O4doub1.22Å1.25Å
C5C4sing1.47Å1.39Å
C6N1sing1.36Å1.34Å
C6C5doub1.37Å1.39Å
C6H6sing1.08Å1.08Å
PAO3Asing1.61Å1.62Å
PAO5'sing1.61Å1.60Å
PAO1Asing1.61Å1.51Å
PBO2Bsing1.61Å1.51Å
PBO3Asing1.61Å1.62Å
PGO3Gsing1.61Å1.51Å
PGO3Bsing1.61Å1.62Å
C1'N1sing1.46Å1.47Å
C1'H1'sing1.09Å1.10Å
O1AHO1Asing0.97Å0.95Å
O1BPBdoub1.48Å1.51Å
O1GPGsing1.61Å1.50Å
O1GHO1Gsing0.97Å0.95Å
C2'C1'sing1.54Å1.52Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
O2APAdoub1.48Å1.50Å
O2BHO2Bsing0.97Å0.95Å
O2GPGdoub1.48Å1.51Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.10Å
O3'C3'sing1.43Å1.43Å
O3'HO3'sing0.97Å0.95Å
C30C5sing1.43Å1.29Å
C30C31trip1.17Å1.18Å
C31C32sing1.43Å1.26Å
C32C36sing1.51Å1.50Å
C33C32doub1.33Å1.34Å
C33C34sing1.51Å1.51Å
C33H33sing1.08Å1.08Å
C34C37sing1.53Å1.52Å
C34N35sing1.48Å1.45Å
N35C36sing1.48Å1.44Å
N35O41sing1.46Å1.40Å
C36C40sing1.53Å1.52Å
C37H37sing1.09Å1.10Å
C37H37Asing1.09Å1.10Å
C37H37Bsing1.09Å1.10Å
C38C34sing1.53Å1.52Å
C38H38sing1.09Å1.10Å
C38H38Asing1.09Å1.10Å
C38H38Bsing1.09Å1.10Å
C39C36sing1.53Å1.52Å
C39H39sing1.09Å1.10Å
C39H39Asing1.09Å1.10Å
C39H39Bsing1.09Å1.10Å
O3BPBsing1.61Å1.62Å
O3GHO3Gsing0.97Å0.95Å
C4'C3'sing1.55Å1.52Å
C4'O4'sing1.45Å1.43Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.43Å
C40H40sing1.09Å1.10Å
C40H40Asing1.09Å1.10Å
C40H40Bsing1.09Å1.10Å
C5'C4'sing1.53Å1.51Å
C5'O5'sing1.43Å1.42Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
O41HO41sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1C2O2119.9°119.0°
N1C2N3119.8°122.0°
C2N1C6120.7°121.4°
C2N1C1'116.4°119.3°
O2C2N3120.3°119.0°
C2N3HN3119.8°119.8°
C2N3C4120.5°120.3°
HN3N3C4119.7°119.9°
N3C4O4118.9°120.7°
N3C4C5121.1°118.7°
O4C4C5120.0°120.7°
C4C5C6119.1°118.2°
C4C5C30117.4°120.9°
N1C6C5118.7°119.4°
N1C6H6120.6°120.3°
C6N1C1'122.9°119.3°
C5C6H6120.7°120.3°
C6C5C30123.5°120.9°
O3APAO5'101.7°109.5°
O3APAO1A109.3°109.4°
PAO3APB124.7°134.0°
O3APAO2A109.8°109.5°
O5'PAO1A105.8°109.5°
O5'PAO2A109.1°109.5°
PAO5'C5'120.9°123.0°
PAO1AHO1A109.5°114.0°
O1APAO2A119.5°109.5°
O2BPBO3A105.5°109.5°
O2BPBO1B115.7°109.5°
PBO2BHO2B109.5°114.0°
O2BPBO3B106.7°109.5°
O3APBO1B113.0°109.5°
O3APBO3B103.3°109.4°
O3GPGO3B105.2°109.5°
O3GPGO1G112.0°109.5°
O3GPGO2G112.5°109.5°
PGO3GHO3G109.5°114.0°
O3BPGO1G106.6°109.5°
O3BPGO2G104.8°109.5°
PGO3BPB125.0°134.0°
N1C1'H1'108.0°109.9°
N1C1'C2'107.0°109.9°
N1C1'O4'113.2°109.9°
H1'C1'C2'113.9°109.9°
H1'C1'O4'107.7°109.9°
O1BPBO3B111.7°109.5°
PGO1GHO1G109.5°114.0°
O1GPGO2G114.8°109.5°
C1'C2'H2'111.6°110.5°
C1'C2'H2'A111.6°110.4°
C1'C2'C3'103.1°104.2°
C2'C1'O4'107.2°107.4°
H2'C2'H2'A107.2°110.4°
H2'C2'C3'111.7°110.5°
H2'AC2'C3'111.7°110.6°
C2'C3'H3'112.8°110.9°
C2'C3'O3'112.1°110.9°
C2'C3'C4'103.0°102.1°
H3'C3'O3'104.2°110.8°
H3'C3'C4'113.1°110.9°
C3'O3'HO3'109.5°114.0°
O3'C3'C4'111.9°110.9°
C5C30C31173.2°180.0°
C30C31C32179.9°179.9°
C31C32C36123.1°125.5°
C31C32C33124.8°125.4°
C36C32C33111.9°109.1°
C32C36N35102.0°105.6°
C32C36C40110.4°110.2°
C32C36C39111.3°110.3°
C32C33C34109.7°109.0°
C32C33H33125.1°125.5°
C34C33H33125.2°125.5°
C33C34C37109.3°110.3°
C33C34N35102.3°105.5°
C33C34C38111.0°110.2°
C37C34N35112.9°110.3°
C34C37H37109.5°109.4°
C34C37H37A109.5°109.5°
C34C37H37B109.5°109.4°
C37C34C38111.0°110.2°
C34N35C36113.4°103.2°
C34N35O41125.0°111.0°
N35C34C38110.1°110.3°
C36N35O41121.5°111.1°
N35C36C40108.9°110.1°
N35C36C39111.2°110.3°
N35O41HO41109.5°114.0°
C40C36C39112.6°110.3°
C36C40H40109.5°109.4°
C36C40H40A109.5°109.4°
C36C40H40B109.5°109.5°
H37C37H37A109.5°109.5°
H37C37H37B109.5°109.5°
H37AC37H37B109.5°109.5°
C34C38H38109.5°109.5°
C34C38H38A109.5°109.4°
C34C38H38B109.5°109.4°
H38C38H38A109.4°109.5°
H38C38H38B109.5°109.5°
H38AC38H38B109.5°109.5°
C36C39H39109.5°109.4°
C36C39H39A109.4°109.5°
C36C39H39B109.4°109.4°
H39C39H39A109.5°109.4°
H39C39H39B109.4°109.5°
H39AC39H39B109.5°109.6°
C3'C4'O4'106.6°103.5°
C3'C4'H4'110.7°110.6°
C3'C4'C5'110.6°110.6°
O4'C4'H4'111.5°110.5°
C4'O4'C1'109.9°106.9°
O4'C4'C5'109.8°110.6°
H4'C4'C5'107.6°110.7°
H40C40H40A109.5°109.5°
H40C40H40B109.4°109.5°
H40AC40H40B109.5°109.5°
C4'C5'O5'104.5°109.5°
C4'C5'H5'111.2°109.5°
C4'C5'H5'A111.2°109.5°
O5'C5'H5'111.2°109.5°
O5'C5'H5'A111.2°109.5°
H5'C5'H5'A107.7°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2O2N3179.7°179.9°
N1C2N3HN3179.9°180.0°
N1C2N3C40.2°0.1°
C2N1C6C1'179.6°179.8°
C2N1C6C50.8°0.0°
C2N1C6H6179.2°180.0°
C2N1C1'H1'40.0°174.3°
C2N1C1'C2'83.0°64.7°
C2N1C1'O4'159.1°53.3°
O2C2N3HN30.1°0.0°
O2C2N3C4179.9°180.0°
O2C2N1C6179.8°180.0°
O2C2N1C1'0.1°0.2°
C2N3HN3C4180.0°180.0°
C2N3C4O4179.9°180.0°
C2N3C4C50.2°0.1°
N3C2N1C60.5°0.0°
N3C2N1C1'179.9°179.7°
HN3N3C4O40.0°0.0°
HN3N3C4C5179.8°180.0°
N3C4O4C5179.9°179.9°
N3C4C5C60.5°0.0°
N3C4C5C30179.7°180.0°
O4C4C5C6179.6°180.0°
O4C4C5C300.2°0.1°
C4C5C6N10.8°0.0°
C4C5C6C30179.8°179.9°
C4C5C6H6179.2°180.0°
C4C5C30C313.2°58.5°
N1C6C5H6180.0°180.0°
C6N1C1'H1'139.7°6.0°
C6N1C1'C2'97.3°115.1°
N1C6C5C30179.5°180.0°
C6N1C1'O4'20.5°127.0°
C5C6N1C1'179.6°179.7°
C6C5C30C31177.0°121.6°
H6C6N1C1'0.4°0.3°
H6C6C5C300.5°0.0°
O3APAO5'O1A114.1°120.0°
O3APAO5'O2A116.0°120.0°
O3APAO1AO2A127.7°120.0°
PAO3APBO2B130.4°80.0°
O3APAO1AHO1A127.7°60.0°
PAO3APBO1B3.1°40.0°
PAO3APBO3B117.7°160.0°
O3APAO5'C5'109.3°175.0°
O5'PAO1AO2A123.5°120.0°
O5'PAO3APB90.2°160.0°
O5'PAO1AHO1A123.5°60.0°
PAO5'C5'C4'148.8°180.0°
PAO5'C5'H5'91.2°60.0°
PAO5'C5'H5'A28.8°60.0°
O1APAO3APB158.3°80.0°
O1APAO5'C5'136.6°65.0°
O2BPBO3AO1B127.3°120.0°
O2BPBO3AO3B111.9°120.0°
O2BPBO3BPG158.8°75.0°
O2BPBO1BO3B122.4°120.0°
O3APBO3BPG90.2°165.0°
O3APBO1BO3B116.0°120.0°
PBO3APAO2A25.3°40.0°
O3APBO2BHO2B125.6°59.9°
O3GPGO3BO1G119.1°120.0°
O3GPGO3BO2G118.8°120.0°
O3GPGO1GO2G129.8°120.0°
O3GPGO1GHO1G129.8°60.0°
O3GPGO3BPB122.7°165.0°
PGO3BPBO1B31.5°45.0°
O3BPGO1GO2G115.6°120.0°
O3BPGO1GHO1G115.6°60.0°
O3BPGO3GHO3G113.5°180.0°
N1C1'H1'C2'118.6°121.0°
N1C1'H1'O4'122.6°121.0°
N1C1'C2'O4'121.7°119.5°
N1C1'C2'H2'142.3°119.9°
N1C1'C2'H2'A22.3°2.6°
N1C1'C2'C3'97.7°121.4°
N1C1'O4'C4'111.2°145.8°
H1'C1'C2'O4'119.1°119.5°
H1'C1'C2'H2'23.1°1.2°
H1'C1'C2'H2'A96.9°123.6°
H1'C1'C2'C3'143.1°117.5°
H1'C1'O4'C4'129.5°93.1°
HO1AO1APAO2A0.0°180.0°
O1BPBO2BHO2B0.0°179.9°
O1GPGO3BPB3.6°75.0°
O1GPGO3GHO3G131.1°59.9°
HO1GO1GPGO2G0.0°180.0°
C1'C2'H2'H2'A122.5°122.5°
C1'C2'H2'C3'114.9°114.8°
C1'C2'H2'AC3'114.9°114.8°
C1'C2'C3'H3'91.1°97.3°
C1'C2'C3'O3'151.6°139.1°
C1'C2'C3'C4'31.2°20.9°
C2'C1'O4'C4'6.6°26.3°
H2'C2'H2'AC3'122.6°122.7°
H2'C2'C3'H3'148.9°144.0°
H2'C2'C3'O3'31.6°20.4°
H2'C2'C3'C4'88.8°97.8°
H2'C2'C1'O4'96.0°120.6°
H2'AC2'C3'H3'28.9°21.4°
H2'AC2'C3'O3'88.4°102.2°
H2'AC2'C3'C4'151.2°139.6°
H2'AC2'C1'O4'144.1°116.9°
O2APAO5'C5'6.8°55.0°
HO2BO2BPBO3B124.9°60.0°
O2GPGO3BPB118.5°45.0°
O2GPGO3GHO3G0.0°60.0°
C2'C3'H3'O3'121.8°123.6°
C2'C3'H3'C4'116.5°112.7°
C2'C3'O3'C4'115.1°112.7°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'O4'28.4°37.0°
C2'C3'C4'H4'93.1°81.4°
C3'C2'C1'O4'24.1°1.9°
C2'C3'C4'C5'147.7°155.5°
H3'C3'O3'C4'122.5°123.6°
H3'C3'O3'HO3'57.6°62.2°
H3'C3'C4'O4'93.8°81.3°
H3'C3'C4'H4'144.7°160.4°
H3'C3'C4'C5'25.5°37.3°
O3'C3'C4'O4'148.9°155.1°
O3'C3'C4'H4'27.5°36.7°
O3'C3'C4'C5'91.7°86.3°
HO3'O3'C3'C4'64.9°174.2°
C5C30C31C3273.6°161.4°
C30C31C32C3696.2°39.9°
C30C31C32C3377.9°140.4°
C31C32C36C33174.8°179.7°
C31C32C33C34166.7°180.0°
C31C32C33H3313.3°0.1°
C31C32C36N35170.7°163.0°
C31C32C36C4055.2°78.2°
C31C32C36C3970.6°43.8°
C36C32C33C348.0°0.3°
C36C32C33H33172.0°179.8°
C32C36N35C341.7°26.3°
C32C36N35C40116.6°118.9°
C32C36N35C39118.8°119.1°
C32C36N35O41177.9°145.3°
C32C36C40C39125.1°122.0°
C32C36C39H39180.0°61.4°
C32C36C39H39A60.0°178.6°
C32C36C39H39B60.0°58.5°
C32C36C40H40180.0°53.1°
C32C36C40H40A60.0°173.1°
C32C36C40H40B60.0°66.9°
C32C33C34H33180.0°179.9°
C32C33C34C37111.5°101.8°
C32C33C34N358.4°17.2°
C33C32C36N354.1°16.7°
C33C32C36C40119.6°102.1°
C32C33C34C38125.7°136.3°
C33C32C36C39114.6°135.9°
C33C34C37N35113.2°116.1°
C33C34C37C38122.8°121.9°
C33C34N35C38118.1°119.0°
C33C34N35C365.9°26.4°
C33C34N35O41173.6°145.6°
C33C34C37H37180.0°66.7°
C33C34C37H37A60.0°173.3°
C33C34C37H37B60.0°53.3°
C33C34C38H38180.0°58.5°
C33C34C38H38A60.0°178.5°
C33C34C38H38B60.0°61.5°
H33C33C34C3768.5°78.1°
H33C33C34N35171.6°162.9°
H33C33C34C3854.2°43.8°
C37C34N35C38124.6°122.0°
C37C34N35C36111.5°92.6°
C37C34N35O4169.0°26.5°
C34C37H37H37A120.0°120.0°
C34C37H37H37B120.0°120.0°
C34C37H37AH37B120.0°120.0°
C37C34C38H3858.2°179.5°
C37C34C38H38A61.8°59.5°
C37C34C38H38B178.2°60.4°
C34N35C36O41179.6°119.0°
C34N35C36C40115.0°92.7°
N35C34C37H3766.8°177.2°
N35C34C37H37A53.2°57.2°
N35C34C37H37B173.1°62.8°
N35C34C38H3867.4°57.5°
N35C34C38H38A172.6°62.5°
N35C34C38H38B52.6°177.6°
C34N35C36C39120.4°145.4°
C34N35O41HO41180.0°59.9°
N35C36C40C39123.8°122.0°
C36N35C34C38124.0°145.4°
N35C36C39H3967.1°177.7°
N35C36C39H39A53.0°62.4°
N35C36C39H39B173.0°57.7°
N35C36C40H4068.8°62.9°
N35C36C40H40A171.1°57.1°
N35C36C40H40B51.1°177.1°
C36N35O41HO410.5°174.1°
O41N35C36C4065.5°26.4°
O41N35C34C3855.5°95.4°
O41N35C36C3959.1°95.6°
C40C36C39H3955.4°60.5°
C40C36C39H39A175.4°59.4°
C40C36C39H39B64.5°179.5°
C36C40H40H40A120.0°119.9°
C36C40H40H40B120.0°120.0°
C36C40H40AH40B120.0°120.0°
H37C37H37AH37B120.0°120.1°
H37C37C34C3857.2°55.2°
H37AC37C34C38177.2°64.8°
H37BC37C34C3862.8°175.2°
C34C38H38H38A120.0°120.0°
C34C38H38H38B120.0°120.0°
C34C38H38AH38B120.0°120.0°
H38C38H38AH38B120.0°120.0°
C36C39H39H39A120.0°120.0°
C36C39H39H39B120.0°120.0°
C36C39H39AH39B120.0°120.0°
C39C36C40H4054.9°175.1°
C39C36C40H40A65.1°64.9°
C39C36C40H40B174.9°55.1°
H39C39H39AH39B120.0°120.0°
C3'C4'O4'H4'121.0°118.5°
C3'C4'O4'C5'119.8°118.5°
C3'C4'H4'C5'121.0°123.0°
C3'C4'O4'C1'13.8°39.9°
C3'C4'C5'O5'40.1°175.0°
C3'C4'C5'H5'160.1°55.0°
C3'C4'C5'H5'A79.9°65.0°
O4'C4'H4'C5'120.5°122.9°
O4'C4'C5'O5'77.2°70.8°
O4'C4'C5'H5'42.8°169.2°
O4'C4'C5'H5'A162.8°49.2°
H4'C4'O4'C1'107.2°78.6°
H4'C4'C5'O5'161.2°52.0°
H4'C4'C5'H5'78.8°68.0°
H4'C4'C5'H5'A41.2°172.0°
C1'O4'C4'C5'133.7°158.4°
H40C40H40AH40B120.0°120.1°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C4'C5'H5'H5'A122.0°120.0°
O5'C5'H5'H5'A122.0°120.0°

222415

PDB entries from 2024-07-10

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