S9X
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.49Å | |
O | C | doub | 1.21Å | 1.25Å | |
C | CA | sing | 1.51Å | 1.55Å | |
CA | CB | sing | 1.53Å | 1.55Å | |
CA | CB1 | sing | 1.53Å | 1.55Å | |
CB | CG | sing | 1.53Å | 1.53Å | |
CE | CD | sing | 1.53Å | 1.51Å | |
CB1 | CG1 | sing | 1.53Å | 1.52Å | |
CG | CD | sing | 1.53Å | 1.51Å | |
CG1 | CD1 | sing | 1.53Å | 1.50Å | |
CD1 | CE1 | sing | 1.53Å | 1.51Å | |
CB1 | H1 | sing | 1.09Å | 1.10Å | |
CB1 | H3 | sing | 1.09Å | 1.10Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
CB | H7 | sing | 1.09Å | 1.10Å | |
CB | H8 | sing | 1.09Å | 1.10Å | |
CG | H9 | sing | 1.09Å | 1.10Å | |
CG | H10 | sing | 1.09Å | 1.10Å | |
CD | H11 | sing | 1.09Å | 1.10Å | |
CD | H12 | sing | 1.09Å | 1.10Å | |
CE | H13 | sing | 1.09Å | 1.10Å | |
CE | H14 | sing | 1.09Å | 1.10Å | |
CE | H15 | sing | 1.09Å | 1.10Å | |
CG1 | H16 | sing | 1.09Å | 1.10Å | |
CG1 | H17 | sing | 1.09Å | 1.10Å | |
CD1 | H18 | sing | 1.09Å | 1.10Å | |
CD1 | H19 | sing | 1.09Å | 1.10Å | |
CE1 | H20 | sing | 1.09Å | 1.10Å | |
CE1 | H21 | sing | 1.09Å | 1.10Å | |
CE1 | H22 | sing | 1.09Å | 1.10Å | |
C | OXT | sing | 1.34Å | 1.33Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N | CA | C | 107.1° | 109.5° |
N | CA | CB | 111.2° | 109.4° |
N | CA | CB1 | 108.9° | 109.5° |
CA | N | H | 109.5° | 111.0° |
CA | N | H2 | 109.5° | 111.0° |
O | C | CA | 118.3° | 120.0° |
O | C | OXT | 124.4° | 120.0° |
C | CA | CB | 113.3° | 109.5° |
C | CA | CB1 | 105.5° | 109.5° |
CA | C | OXT | 117.2° | 120.0° |
CB | CA | CB1 | 110.6° | 109.5° |
CA | CB | CG | 118.9° | 109.5° |
CA | CB | H7 | 107.1° | 109.5° |
CA | CB | H8 | 107.0° | 109.4° |
CA | CB1 | CG1 | 118.1° | 109.5° |
CA | CB1 | H1 | 107.3° | 109.5° |
CA | CB1 | H3 | 107.3° | 109.5° |
CB | CG | CD | 117.8° | 109.5° |
CG | CB | H7 | 107.0° | 109.5° |
CG | CB | H8 | 107.1° | 109.5° |
CB | CG | H9 | 107.4° | 109.5° |
CB | CG | H10 | 107.4° | 109.4° |
CE | CD | CG | 113.6° | 109.5° |
CE | CD | H11 | 108.5° | 109.5° |
CE | CD | H12 | 108.5° | 109.4° |
CD | CE | H13 | 109.5° | 109.5° |
CD | CE | H14 | 109.5° | 109.5° |
CD | CE | H15 | 109.5° | 109.5° |
CB1 | CG1 | CD1 | 113.8° | 109.4° |
CG1 | CB1 | H1 | 107.3° | 109.4° |
CG1 | CB1 | H3 | 107.3° | 109.5° |
CB1 | CG1 | H16 | 108.4° | 109.4° |
CB1 | CG1 | H17 | 108.4° | 109.5° |
CD | CG | H9 | 107.3° | 109.5° |
CD | CG | H10 | 107.3° | 109.5° |
CG | CD | H11 | 108.4° | 109.5° |
CG | CD | H12 | 108.4° | 109.5° |
CG1 | CD1 | CE1 | 113.8° | 109.4° |
CD1 | CG1 | H16 | 108.4° | 109.5° |
CD1 | CG1 | H17 | 108.4° | 109.6° |
CG1 | CD1 | H18 | 108.4° | 109.5° |
CG1 | CD1 | H19 | 108.4° | 109.5° |
CE1 | CD1 | H18 | 108.4° | 109.4° |
CE1 | CD1 | H19 | 108.4° | 109.5° |
CD1 | CE1 | H20 | 109.5° | 109.4° |
CD1 | CE1 | H21 | 109.5° | 109.5° |
CD1 | CE1 | H22 | 109.5° | 109.5° |
H1 | CB1 | H3 | 109.5° | 109.4° |
H | N | H2 | 109.5° | 111.0° |
H7 | CB | H8 | 109.5° | 109.4° |
H9 | CG | H10 | 109.5° | 109.5° |
H11 | CD | H12 | 109.5° | 109.5° |
H13 | CE | H14 | 109.5° | 109.4° |
H13 | CE | H15 | 109.5° | 109.5° |
H14 | CE | H15 | 109.4° | 109.5° |
H16 | CG1 | H17 | 109.5° | 109.4° |
H18 | CD1 | H19 | 109.5° | 109.5° |
H20 | CE1 | H21 | 109.5° | 109.4° |
H20 | CE1 | H22 | 109.5° | 109.4° |
H21 | CE1 | H22 | 109.4° | 109.5° |
C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N | CA | C | O | 124.9° | 145.0° |
N | CA | C | CB | 123.0° | 119.9° |
N | CA | C | CB1 | 115.9° | 120.0° |
N | CA | CB | CB1 | 121.1° | 120.0° |
N | CA | CB | CG | 153.6° | 60.0° |
N | CA | CB1 | CG1 | 60.3° | 55.0° |
N | CA | CB1 | H1 | 60.9° | 65.0° |
N | CA | CB1 | H3 | 178.5° | 175.0° |
CA | N | H | H2 | 120.0° | 124.0° |
N | CA | CB | H7 | 85.1° | 180.0° |
N | CA | CB | H8 | 32.2° | 60.1° |
N | CA | C | OXT | 53.8° | 34.7° |
O | C | CA | OXT | 178.7° | 179.8° |
O | C | CA | CB | 1.9° | 95.0° |
O | C | CA | CB1 | 119.2° | 25.0° |
O | C | OXT | HXT | 0.0° | 0.1° |
C | CA | CB | CB1 | 118.2° | 120.0° |
C | CA | CB | CG | 85.7° | 60.0° |
C | CA | CB1 | CG1 | 174.9° | 65.0° |
C | CA | CB1 | H1 | 53.7° | 175.0° |
C | CA | CB1 | H3 | 63.9° | 55.0° |
C | CA | N | H | 180.0° | 180.0° |
C | CA | N | H2 | 60.0° | 56.1° |
C | CA | CB | H7 | 35.6° | 60.0° |
C | CA | CB | H8 | 152.9° | 180.0° |
CA | C | OXT | HXT | 178.6° | 179.7° |
CA | CB | CG | H7 | 121.3° | 120.0° |
CA | CB | CG | H8 | 121.3° | 120.0° |
CB | CA | CB1 | CG1 | 62.2° | 175.0° |
CA | CB | CG | CD | 74.3° | 180.0° |
CB | CA | CB1 | H1 | 176.6° | 55.0° |
CB | CA | CB1 | H3 | 59.0° | 65.0° |
CB | CA | N | H | 55.8° | 60.0° |
CB | CA | N | H2 | 64.3° | 176.0° |
CA | CB | H7 | H8 | 115.7° | 119.9° |
CA | CB | CG | H9 | 164.5° | 60.0° |
CA | CB | CG | H10 | 46.9° | 60.0° |
CB | CA | C | OXT | 176.8° | 85.2° |
CB1 | CA | CB | CG | 32.5° | 180.0° |
CA | CB1 | CG1 | H1 | 121.2° | 120.0° |
CA | CB1 | CG1 | H3 | 121.2° | 120.0° |
CA | CB1 | CG1 | CD1 | 175.7° | 180.0° |
CA | CB1 | H1 | H3 | 116.1° | 120.0° |
CB1 | CA | N | H | 66.4° | 60.0° |
CB1 | CA | N | H2 | 173.6° | 64.0° |
CB1 | CA | CB | H7 | 153.8° | 60.0° |
CB1 | CA | CB | H8 | 88.9° | 60.0° |
CA | CB1 | CG1 | H16 | 63.7° | 60.0° |
CA | CB1 | CG1 | H17 | 55.0° | 59.9° |
CB1 | CA | C | OXT | 62.1° | 154.8° |
CB | CG | CD | CE | 70.5° | 180.0° |
CB | CG | CD | H9 | 121.2° | 120.0° |
CB | CG | CD | H10 | 121.2° | 119.9° |
CG | CB | H7 | H8 | 115.7° | 120.0° |
CB | CG | H9 | H10 | 116.2° | 120.0° |
CB | CG | CD | H11 | 50.1° | 60.0° |
CB | CG | CD | H12 | 168.9° | 60.0° |
CE | CD | CG | H11 | 120.6° | 120.0° |
CE | CD | CG | H12 | 120.6° | 120.0° |
CE | CD | CG | H9 | 50.7° | 60.0° |
CE | CD | CG | H10 | 168.3° | 60.1° |
CE | CD | H11 | H12 | 118.2° | 120.0° |
CD | CE | H13 | H14 | 120.0° | 120.0° |
CD | CE | H13 | H15 | 120.0° | 120.0° |
CD | CE | H14 | H15 | 120.0° | 120.1° |
CB1 | CG1 | CD1 | H16 | 120.6° | 119.9° |
CB1 | CG1 | CD1 | H17 | 120.6° | 120.0° |
CB1 | CG1 | CD1 | CE1 | 175.0° | 180.0° |
CG1 | CB1 | H1 | H3 | 116.1° | 120.0° |
CB1 | CG1 | H16 | H17 | 118.0° | 120.0° |
CB1 | CG1 | CD1 | H18 | 64.3° | 60.1° |
CB1 | CG1 | CD1 | H19 | 54.4° | 60.0° |
CD | CG | CB | H7 | 47.0° | 60.0° |
CD | CG | CB | H8 | 164.4° | 60.0° |
CD | CG | H9 | H10 | 116.2° | 120.0° |
CG | CD | H11 | H12 | 118.1° | 120.0° |
CG | CD | CE | H13 | 180.0° | 60.0° |
CG | CD | CE | H14 | 60.0° | 60.0° |
CG | CD | CE | H15 | 60.0° | 180.0° |
CG1 | CD1 | CE1 | H18 | 120.6° | 119.9° |
CG1 | CD1 | CE1 | H19 | 120.6° | 120.0° |
CD1 | CG1 | CB1 | H1 | 54.5° | 60.0° |
CD1 | CG1 | CB1 | H3 | 63.1° | 59.9° |
CD1 | CG1 | H16 | H17 | 118.1° | 120.1° |
CG1 | CD1 | H18 | H19 | 118.1° | 120.1° |
CG1 | CD1 | CE1 | H20 | 180.0° | 60.0° |
CG1 | CD1 | CE1 | H21 | 60.0° | 59.9° |
CG1 | CD1 | CE1 | H22 | 60.0° | 180.0° |
CE1 | CD1 | CG1 | H16 | 54.4° | 60.1° |
CE1 | CD1 | CG1 | H17 | 64.3° | 60.0° |
CE1 | CD1 | H18 | H19 | 118.0° | 120.0° |
CD1 | CE1 | H20 | H21 | 120.0° | 120.0° |
CD1 | CE1 | H20 | H22 | 120.0° | 120.0° |
CD1 | CE1 | H21 | H22 | 120.0° | 120.1° |
H1 | CB1 | CG1 | H16 | 175.1° | 180.0° |
H1 | CB1 | CG1 | H17 | 66.2° | 60.1° |
H3 | CB1 | CG1 | H16 | 57.5° | 60.0° |
H3 | CB1 | CG1 | H17 | 176.3° | 180.0° |
H7 | CB | CG | H9 | 74.1° | 180.0° |
H7 | CB | CG | H10 | 168.2° | 60.0° |
H8 | CB | CG | H9 | 43.2° | 60.0° |
H8 | CB | CG | H10 | 74.4° | 180.0° |
H9 | CG | CD | H11 | 171.3° | 180.0° |
H9 | CG | CD | H12 | 69.9° | 60.0° |
H10 | CG | CD | H11 | 71.1° | 60.0° |
H10 | CG | CD | H12 | 47.7° | 180.0° |
H11 | CD | CE | H13 | 59.4° | 180.0° |
H11 | CD | CE | H14 | 60.6° | 60.0° |
H11 | CD | CE | H15 | 179.4° | 60.0° |
H12 | CD | CE | H13 | 59.4° | 60.0° |
H12 | CD | CE | H14 | 179.4° | 180.0° |
H12 | CD | CE | H15 | 60.6° | 60.0° |
H13 | CE | H14 | H15 | 120.0° | 120.0° |
H16 | CG1 | CD1 | H18 | 175.1° | 180.0° |
H16 | CG1 | CD1 | H19 | 66.2° | 60.0° |
H17 | CG1 | CD1 | H18 | 56.3° | 59.9° |
H17 | CG1 | CD1 | H19 | 175.0° | 180.0° |
H18 | CD1 | CE1 | H20 | 59.3° | 180.0° |
H18 | CD1 | CE1 | H21 | 179.4° | 60.0° |
H18 | CD1 | CE1 | H22 | 60.7° | 60.1° |
H19 | CD1 | CE1 | H20 | 59.4° | 60.0° |
H19 | CD1 | CE1 | H21 | 60.6° | 180.0° |
H19 | CD1 | CE1 | H22 | 179.4° | 60.0° |
H20 | CE1 | H21 | H22 | 120.0° | 120.0° |