RZ5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C4 | S | sing | 1.76Å | 1.66Å | |
| N3S | S | sing | 1.66Å | 1.59Å | |
| O1S | S | doub | 1.42Å | 1.46Å | |
| S | O2S | doub | 1.42Å | 1.44Å | |
| C1' | N' | sing | 1.46Å | 1.49Å | |
| N' | C7 | sing | 1.35Å | 1.35Å | |
| N' | HN' | sing | 0.97Å | 1.00Å | |
| O' | C7 | doub | 1.22Å | 1.26Å | |
| C7 | C1 | sing | 1.48Å | 1.50Å | |
| C1 | C5 | doub | 1.40Å | 1.40Å | Aromatic |
| C1 | C3 | sing | 1.40Å | 1.40Å | Aromatic |
| C3 | C2 | doub | 1.38Å | 1.41Å | Aromatic |
| C2 | C4 | sing | 1.38Å | 1.42Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| C6 | C4 | doub | 1.38Å | 1.44Å | Aromatic |
| C5 | C6 | sing | 1.38Å | 1.40Å | Aromatic |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | C2' | sing | 1.53Å | 1.54Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'A | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.53Å | 1.50Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C3' | C4' | sing | 1.53Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C3' | H3'A | sing | 1.09Å | 1.10Å | |
| N3S | HN3S | sing | 0.97Å | 1.00Å | |
| N3S | HN3A | sing | 0.97Å | 1.00Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C4' | H4'A | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C5' | H5'B | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4 | S | N3S | 109.1° | 107.2° |
| C4 | S | O1S | 107.0° | 106.4° |
| C4 | S | O2S | 106.7° | 106.4° |
| S | C4 | C2 | 121.4° | 119.9° |
| S | C4 | C6 | 122.4° | 119.9° |
| N3S | S | O1S | 111.0° | 106.4° |
| N3S | S | O2S | 106.0° | 106.4° |
| S | N3S | HN3S | 109.5° | 120.0° |
| S | N3S | HN3A | 109.5° | 120.0° |
| O1S | S | O2S | 116.8° | 123.1° |
| C1' | N' | C7 | 124.0° | 120.0° |
| C1' | N' | HN' | 118.0° | 120.0° |
| N' | C1' | C2' | 104.7° | 109.5° |
| N' | C1' | H1' | 111.1° | 109.5° |
| N' | C1' | H1'A | 111.1° | 109.5° |
| C7 | N' | HN' | 118.0° | 119.9° |
| N' | C7 | O' | 122.7° | 120.0° |
| N' | C7 | C1 | 118.5° | 120.0° |
| O' | C7 | C1 | 118.7° | 120.0° |
| C7 | C1 | C5 | 122.1° | 120.2° |
| C7 | C1 | C3 | 119.7° | 120.2° |
| C5 | C1 | C3 | 118.1° | 119.7° |
| C1 | C5 | C6 | 122.4° | 119.9° |
| C1 | C5 | H5 | 118.8° | 120.1° |
| C1 | C3 | C2 | 120.3° | 119.9° |
| C1 | C3 | H3 | 119.8° | 120.1° |
| C3 | C2 | C4 | 122.4° | 120.1° |
| C3 | C2 | H2 | 118.8° | 120.0° |
| C2 | C3 | H3 | 119.8° | 120.0° |
| C4 | C2 | H2 | 118.8° | 119.9° |
| C2 | C4 | C6 | 116.2° | 120.3° |
| C4 | C6 | C5 | 120.5° | 120.2° |
| C4 | C6 | H6 | 119.8° | 119.9° |
| C6 | C5 | H5 | 118.8° | 120.1° |
| C5 | C6 | H6 | 119.8° | 119.9° |
| C2' | C1' | H1' | 111.1° | 109.4° |
| C2' | C1' | H1'A | 111.1° | 109.4° |
| C1' | C2' | C3' | 111.6° | 109.5° |
| C1' | C2' | H2' | 108.8° | 109.5° |
| C1' | C2' | H2'A | 108.7° | 109.4° |
| H1' | C1' | H1'A | 107.8° | 109.4° |
| C3' | C2' | H2' | 108.8° | 109.5° |
| C3' | C2' | H2'A | 108.8° | 109.5° |
| C2' | C3' | C4' | 108.9° | 109.5° |
| C2' | C3' | H3' | 109.6° | 109.5° |
| C2' | C3' | H3'A | 109.6° | 109.5° |
| H2' | C2' | H2'A | 110.1° | 109.5° |
| C4' | C3' | H3' | 109.6° | 109.5° |
| C4' | C3' | H3'A | 109.7° | 109.5° |
| C3' | C4' | C5' | 106.7° | 109.5° |
| C3' | C4' | H4' | 110.4° | 109.5° |
| C3' | C4' | H4'A | 110.4° | 109.4° |
| H3' | C3' | H3'A | 109.3° | 109.5° |
| HN3S | N3S | HN3A | 109.5° | 120.0° |
| C5' | C4' | H4' | 110.4° | 109.5° |
| C5' | C4' | H4'A | 110.4° | 109.5° |
| C4' | C5' | H5' | 109.5° | 109.5° |
| C4' | C5' | H5'A | 109.5° | 109.5° |
| C4' | C5' | H5'B | 109.5° | 109.5° |
| H4' | C4' | H4'A | 108.5° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
| H5' | C5' | H5'B | 109.5° | 109.5° |
| H5'A | C5' | H5'B | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C4 | S | N3S | O1S | 117.6° | 113.6° |
| C4 | S | N3S | O2S | 114.6° | 113.5° |
| C4 | S | O1S | O2S | 119.4° | 122.9° |
| S | C4 | C2 | C3 | 178.6° | 180.0° |
| S | C4 | C2 | C6 | 179.8° | 180.0° |
| S | C4 | C2 | H2 | 1.4° | 0.1° |
| S | C4 | C6 | C5 | 177.5° | 180.0° |
| S | C4 | C6 | H6 | 2.4° | 0.0° |
| C4 | S | N3S | HN3S | 180.0° | 0.1° |
| C4 | S | N3S | HN3A | 60.0° | 180.0° |
| N3S | S | O1S | O2S | 121.7° | 122.9° |
| N3S | S | C4 | C2 | 49.5° | 90.0° |
| N3S | S | C4 | C6 | 130.2° | 90.0° |
| S | N3S | HN3S | HN3A | 120.0° | 179.9° |
| O1S | S | C4 | C2 | 169.7° | 156.4° |
| O1S | S | C4 | C6 | 10.0° | 23.6° |
| O1S | S | N3S | HN3S | 62.3° | 113.5° |
| O1S | S | N3S | HN3A | 57.7° | 66.4° |
| O2S | S | C4 | C2 | 64.6° | 23.5° |
| O2S | S | C4 | C6 | 115.6° | 156.4° |
| O2S | S | N3S | HN3S | 65.5° | 113.6° |
| O2S | S | N3S | HN3A | 174.5° | 66.5° |
| C1' | N' | C7 | HN' | 180.0° | 180.0° |
| C1' | N' | C7 | O' | 0.6° | 0.0° |
| C1' | N' | C7 | C1 | 179.5° | 180.0° |
| N' | C1' | C2' | H1' | 120.0° | 120.1° |
| N' | C1' | C2' | H1'A | 120.0° | 120.0° |
| N' | C1' | H1' | H1'A | 122.0° | 120.1° |
| N' | C1' | C2' | C3' | 164.1° | 180.0° |
| N' | C1' | C2' | H2' | 44.1° | 60.0° |
| N' | C1' | C2' | H2'A | 75.9° | 60.0° |
| N' | C7 | O' | C1 | 178.9° | 179.9° |
| N' | C7 | C1 | C5 | 173.2° | 180.0° |
| N' | C7 | C1 | C3 | 3.5° | 0.3° |
| C7 | N' | C1' | C2' | 86.8° | 180.0° |
| C7 | N' | C1' | H1' | 153.2° | 60.0° |
| C7 | N' | C1' | H1'A | 33.2° | 60.0° |
| HN' | N' | C7 | O' | 179.4° | 180.0° |
| HN' | N' | C7 | C1 | 0.6° | 0.0° |
| HN' | N' | C1' | C2' | 93.2° | 0.0° |
| HN' | N' | C1' | H1' | 26.7° | 120.0° |
| HN' | N' | C1' | H1'A | 146.8° | 120.0° |
| O' | C7 | C1 | C5 | 7.9° | 0.0° |
| O' | C7 | C1 | C3 | 175.4° | 179.7° |
| C7 | C1 | C5 | C3 | 176.7° | 179.7° |
| C7 | C1 | C3 | C2 | 179.8° | 179.8° |
| C7 | C1 | C3 | H3 | 0.2° | 0.3° |
| C7 | C1 | C5 | C6 | 178.7° | 179.7° |
| C7 | C1 | C5 | H5 | 1.3° | 0.3° |
| C5 | C1 | C3 | C2 | 3.4° | 0.1° |
| C5 | C1 | C3 | H3 | 176.6° | 180.0° |
| C1 | C5 | C6 | C4 | 4.0° | 0.0° |
| C1 | C5 | C6 | H5 | 180.0° | 180.0° |
| C1 | C5 | C6 | H6 | 176.0° | 180.0° |
| C1 | C3 | C2 | H3 | 180.0° | 179.9° |
| C1 | C3 | C2 | C4 | 1.8° | 0.1° |
| C1 | C3 | C2 | H2 | 178.2° | 180.0° |
| C3 | C1 | C5 | C6 | 4.6° | 0.1° |
| C3 | C1 | C5 | H5 | 175.4° | 180.0° |
| C3 | C2 | C4 | H2 | 180.0° | 179.9° |
| C3 | C2 | C4 | C6 | 1.1° | 0.1° |
| C4 | C2 | C3 | H3 | 178.2° | 180.0° |
| C2 | C4 | C6 | C5 | 2.2° | 0.0° |
| C2 | C4 | C6 | H6 | 177.8° | 180.0° |
| H2 | C2 | C3 | H3 | 1.8° | 0.1° |
| H2 | C2 | C4 | C6 | 178.8° | 180.0° |
| C4 | C6 | C5 | H6 | 180.0° | 180.0° |
| C4 | C6 | C5 | H5 | 175.9° | 180.0° |
| H5 | C5 | C6 | H6 | 4.0° | 0.0° |
| C2' | C1' | H1' | H1'A | 121.9° | 119.9° |
| C1' | C2' | C3' | H2' | 120.0° | 120.0° |
| C1' | C2' | C3' | H2'A | 120.0° | 120.0° |
| C1' | C2' | H2' | H2'A | 119.1° | 119.9° |
| C1' | C2' | C3' | C4' | 164.5° | 180.0° |
| C1' | C2' | C3' | H3' | 75.5° | 60.0° |
| C1' | C2' | C3' | H3'A | 44.5° | 60.0° |
| H1' | C1' | C2' | C3' | 75.9° | 59.9° |
| H1' | C1' | C2' | H2' | 164.1° | 180.0° |
| H1' | C1' | C2' | H2'A | 44.1° | 60.1° |
| H1'A | C1' | C2' | C3' | 44.1° | 60.0° |
| H1'A | C1' | C2' | H2' | 75.9° | 60.0° |
| H1'A | C1' | C2' | H2'A | 164.1° | NaN° |
| C3' | C2' | H2' | H2'A | 119.1° | 120.0° |
| C2' | C3' | C4' | H3' | 120.0° | 120.0° |
| C2' | C3' | C4' | H3'A | 120.0° | 120.0° |
| C2' | C3' | H3' | H3'A | 120.2° | 120.0° |
| C2' | C3' | C4' | C5' | 138.4° | 180.0° |
| C2' | C3' | C4' | H4' | 18.4° | 60.0° |
| C2' | C3' | C4' | H4'A | 101.6° | 60.0° |
| H2' | C2' | C3' | C4' | 44.5° | 60.0° |
| H2' | C2' | C3' | H3' | 164.5° | 180.0° |
| H2' | C2' | C3' | H3'A | 75.5° | 60.0° |
| H2'A | C2' | C3' | C4' | 75.5° | 60.0° |
| H2'A | C2' | C3' | H3' | 44.5° | 60.0° |
| H2'A | C2' | C3' | H3'A | 164.5° | 180.0° |
| C4' | C3' | H3' | H3'A | 120.3° | 120.0° |
| C3' | C4' | C5' | H4' | 120.0° | 120.0° |
| C3' | C4' | C5' | H4'A | 120.0° | 120.0° |
| C3' | C4' | H4' | H4'A | 121.2° | 120.0° |
| C3' | C4' | C5' | H5' | 180.0° | 60.0° |
| C3' | C4' | C5' | H5'A | 60.0° | 180.0° |
| C3' | C4' | C5' | H5'B | 60.0° | 60.0° |
| H3' | C3' | C4' | C5' | 101.6° | 60.0° |
| H3' | C3' | C4' | H4' | 138.4° | 180.0° |
| H3' | C3' | C4' | H4'A | 18.4° | 60.0° |
| H3'A | C3' | C4' | C5' | 18.5° | 60.0° |
| H3'A | C3' | C4' | H4' | 101.5° | 60.0° |
| H3'A | C3' | C4' | H4'A | 138.5° | 180.0° |
| C5' | C4' | H4' | H4'A | 121.1° | 120.0° |
| C4' | C5' | H5' | H5'A | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'B | 120.0° | 120.0° |
| C4' | C5' | H5'A | H5'B | 120.0° | 120.0° |
| H4' | C4' | C5' | H5' | 60.0° | 60.0° |
| H4' | C4' | C5' | H5'A | 180.0° | 60.0° |
| H4' | C4' | C5' | H5'B | 60.0° | 180.0° |
| H4'A | C4' | C5' | H5' | 60.0° | 180.0° |
| H4'A | C4' | C5' | H5'A | 60.0° | 60.0° |
| H4'A | C4' | C5' | H5'B | 180.0° | 60.0° |
| H5' | C5' | H5'A | H5'B | 120.0° | 120.0° |
