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RV1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CNsing1.40Å1.37Å
CC1doub1.39Å1.40ÅAromatic
CC5sing1.39Å1.40ÅAromatic
OSdoub1.42Å1.43Å
SN1sing1.66Å1.64Å
SO1doub1.42Å1.43Å
SC3sing1.76Å1.76Å
C1C2sing1.38Å1.38ÅAromatic
N1C6sing1.35Å1.37Å
C2C3doub1.38Å1.39ÅAromatic
O2C6doub1.21Å1.23Å
C3C4sing1.38Å1.39ÅAromatic
C4C5doub1.38Å1.38ÅAromatic
C6C7sing1.51Å1.51Å
C7C8sing1.53Å1.50Å
C7C9sing1.53Å1.49Å
C8C9sing1.53Å1.47Å
NHNsing0.97Å1.00Å
NHNAsing0.97Å1.00Å
C1H1sing1.08Å1.08Å
N1HN1sing0.97Å1.00Å
C2H2sing1.08Å1.08Å
C4H4sing1.08Å1.08Å
C5H5sing1.08Å1.08Å
C7H7sing1.09Å1.10Å
C8H8sing1.09Å1.10Å
C8H8Asing1.09Å1.10Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NCC1120.9°120.1°
NCC5120.8°120.0°
CNHN109.5°119.9°
CNHNA109.5°120.0°
C1CC5118.4°119.9°
CC1C2121.0°119.9°
CC1H1119.5°120.0°
CC5C4121.0°119.9°
CC5H5119.5°120.1°
OSN1109.5°106.4°
OSO1120.1°123.1°
OSC3108.3°106.4°
N1SO1102.6°106.4°
N1SC3107.7°107.2°
SN1C6124.9°120.0°
SN1HN1117.6°120.0°
O1SC3108.0°106.4°
SC3C2119.5°119.9°
SC3C4119.6°119.9°
C1C2C3119.4°120.1°
C2C1H1119.5°120.1°
C1C2H2120.3°119.9°
N1C6O2124.0°120.0°
N1C6C7113.5°120.0°
C6N1HN1117.6°120.0°
C2C3C4120.7°120.1°
C3C2H2120.3°119.9°
O2C6C7122.5°120.0°
C3C4C5119.4°120.1°
C3C4H4120.3°119.9°
C5C4H4120.3°120.0°
C4C5H5119.5°120.0°
C6C7C8118.8°117.5°
C6C7C9116.8°117.5°
C6C7H7116.5°115.5°
C8C7C958.8°60.0°
C7C8C960.3°60.0°
C8C7H7116.7°117.5°
C7C8H8120.0°117.5°
C7C8H8A119.9°117.5°
C7C9C860.8°60.0°
C9C7H7116.8°117.5°
C7C9H9119.8°117.5°
C7C9H9A119.8°117.5°
C9C8H8120.0°117.6°
C9C8H8A119.9°117.5°
C8C9H9119.9°117.6°
C8C9H9A119.9°117.5°
HNNHNA109.5°120.1°
H8C8H8A109.4°115.5°
H9C9H9A109.5°115.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NCC1C5179.8°179.7°
NCC1C2179.7°180.0°
NCC5C4179.7°179.7°
CNHNHNA120.0°180.0°
NCC1H10.3°0.1°
NCC5H50.3°0.0°
CC1C2H1180.0°179.9°
CC1C2C31.7°0.0°
C1CC5C40.5°0.5°
C1CNHN180.0°0.0°
C1CNHNA60.0°180.0°
CC1C2H2178.3°180.0°
C1CC5H5179.5°179.8°
C5CC1C20.5°0.3°
CC5C4C31.7°0.6°
CC5C4H5180.0°179.7°
C5CNHN0.2°179.7°
C5CNHNA120.2°0.3°
C5CC1H1179.5°179.8°
CC5C4H4178.3°179.7°
OSN1O1128.7°132.9°
OSN1C3117.5°113.5°
OSO1C3124.7°122.9°
OSN1C661.2°48.5°
OSC3C220.7°156.5°
OSC3C4155.2°23.5°
OSN1HN1118.8°131.5°
N1SO1C3113.6°114.1°
SN1C6HN1180.0°180.0°
N1SC3C297.7°90.0°
SN1C6O20.5°0.0°
N1SC3C486.4°90.0°
SN1C6C7177.9°180.0°
O1SN1C6170.1°178.6°
O1SC3C2152.2°23.6°
O1SC3C423.7°156.4°
O1SN1HN19.9°1.4°
SC3C2C1178.8°180.0°
C3SN1C656.3°65.0°
SC3C2C4175.9°179.9°
SC3C4C5178.8°179.7°
C3SN1HN1123.7°115.0°
SC3C2H21.2°0.0°
SC3C4H41.1°0.0°
C1C2C3H2180.0°180.0°
C1C2C3C43.0°0.1°
N1C6O2C7177.1°180.0°
N1C6C7C8154.7°180.0°
N1C6C7C9137.9°111.4°
N1C6C7H76.8°34.3°
C2C3C4C53.0°0.3°
C3C2C1H1178.3°180.0°
C2C3C4H4177.0°180.0°
O2C6C7C827.9°0.0°
O2C6C7C939.5°68.6°
O2C6N1HN1179.5°180.0°
O2C6C7H7175.8°145.7°
C3C4C5H4180.0°179.7°
C4C3C2H2177.0°180.0°
C3C4C5H5178.3°179.7°
C6C7C8C9105.6°107.5°
C6C7C8H7147.8°145.0°
C6C7C9H7144.6°145.0°
C7C6N1HN12.1°0.0°
C6C7C8H8144.8°144.9°
C6C7C8H8A4.0°0.0°
C6C7C9H90.7°0.1°
C6C7C9H9A141.3°145.0°
C8C7C9H7106.4°107.5°
C7C8C9H8109.6°107.5°
C7C8C9H8A109.6°107.4°
C7C8H8H8A144.5°145.6°
C8C7C9H9109.7°107.6°
C8C7C9H9A109.7°107.5°
C7C9H9H9A144.3°145.6°
C9C8H8H8A144.5°145.7°
C8C9H9H9A144.3°145.7°
H1C1C2H21.7°0.1°
H4C4C5H51.7°0.0°
H7C7C8H83.0°0.1°
H7C7C8H8A143.8°145.0°
H7C7C9H9143.9°145.0°
H7C7C9H9A3.3°0.0°
H8C8C9H9140.7°145.0°
H8C8C9H9A0.1°0.0°
H8AC8C9H90.1°0.0°
H8AC8C9H9A140.8°145.1°

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PDB entries from 2024-07-17

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