RSN
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.50Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| N6 | C6 | sing | 1.40Å | 1.40Å | |
| C2' | C3' | sing | 1.55Å | 1.54Å | |
| C2' | C1' | sing | 1.55Å | 1.54Å | |
| OD1 | CG | doub | 1.21Å | 1.26Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | N7 | sing | 1.46Å | 1.46Å | |
| C5' | O5' | sing | 1.43Å | 1.46Å | |
| CG | CB | sing | 1.51Å | 1.53Å | |
| CG | OD2 | sing | 1.34Å | 1.25Å | |
| C6 | C1 | doub | 1.38Å | 1.40Å | Aromatic |
| C6 | C5 | sing | 1.39Å | 1.41Å | Aromatic |
| CB | CA | sing | 1.53Å | 1.53Å | |
| N7 | C5 | sing | 1.38Å | 1.38Å | Aromatic |
| N7 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| O5' | S | sing | 1.52Å | 1.59Å | |
| C1 | C2 | sing | 1.39Å | 1.39Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.40Å | Aromatic |
| O2S | S | doub | 1.42Å | 1.42Å | |
| N3S | S | sing | 1.66Å | 1.60Å | |
| N3S | C | sing | 1.35Å | 1.44Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | N | sing | 1.47Å | 1.46Å | |
| S | O1S | doub | 1.42Å | 1.42Å | |
| C8 | N9 | doub | 1.30Å | 1.31Å | Aromatic |
| C | O | doub | 1.21Å | 1.23Å | |
| C2 | C2M | sing | 1.51Å | 1.51Å | |
| C2 | C3 | doub | 1.37Å | 1.39Å | Aromatic |
| C4 | N9 | sing | 1.36Å | 1.39Å | Aromatic |
| C4 | C3 | sing | 1.40Å | 1.39Å | Aromatic |
| C2M | O2M | sing | 1.43Å | 1.42Å | |
| C1 | H1 | sing | 1.08Å | 1.08Å | |
| C3 | H2 | sing | 1.08Å | 1.08Å | |
| N6 | H3 | sing | 0.97Å | 1.00Å | |
| N6 | H4 | sing | 0.97Å | 1.00Å | |
| N | H5 | sing | 1.01Å | 1.00Å | |
| N | H6 | sing | 1.01Å | 1.00Å | |
| CA | H8 | sing | 1.09Å | 1.10Å | |
| CB | H9 | sing | 1.09Å | 1.10Å | |
| CB | H10 | sing | 1.09Å | 1.10Å | |
| OD2 | H11 | sing | 0.97Å | 0.95Å | |
| C1' | H12 | sing | 1.09Å | 1.10Å | |
| C2' | H13 | sing | 1.09Å | 1.10Å | |
| C2M | H14 | sing | 1.09Å | 1.10Å | |
| C2M | H15 | sing | 1.09Å | 1.10Å | |
| C3' | H16 | sing | 1.09Å | 1.10Å | |
| C4' | H17 | sing | 1.09Å | 1.10Å | |
| C5' | H18 | sing | 1.09Å | 1.10Å | |
| C5' | H19 | sing | 1.09Å | 1.10Å | |
| C8 | H20 | sing | 1.08Å | 1.08Å | |
| N3S | H21 | sing | 0.97Å | 1.00Å | |
| O2' | H22 | sing | 0.97Å | 0.95Å | |
| O2M | H23 | sing | 0.97Å | 0.95Å | |
| O3' | H24 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2' | C2' | C3' | 112.6° | 110.5° |
| O2' | C2' | C1' | 108.4° | 110.5° |
| O2' | C2' | H13 | 112.2° | 110.6° |
| C2' | O2' | H22 | 109.5° | 114.0° |
| O3' | C3' | C4' | 107.7° | 110.7° |
| O3' | C3' | C2' | 115.7° | 110.5° |
| O3' | C3' | H16 | 111.2° | 110.5° |
| C3' | O3' | H24 | 109.5° | 114.0° |
| C3' | C4' | C5' | 114.1° | 110.4° |
| C3' | C4' | O4' | 104.1° | 104.9° |
| C4' | C3' | C2' | 102.3° | 104.0° |
| C4' | C3' | H16 | 109.8° | 110.5° |
| C3' | C4' | H17 | 109.3° | 110.4° |
| C5' | C4' | O4' | 109.3° | 110.4° |
| C4' | C5' | O5' | 106.2° | 109.5° |
| C5' | C4' | H17 | 109.5° | 110.3° |
| C4' | C5' | H18 | 110.3° | 109.5° |
| C4' | C5' | H19 | 110.3° | 109.5° |
| C4' | O4' | C1' | 109.7° | 105.3° |
| O4' | C4' | H17 | 110.4° | 110.5° |
| N6 | C6 | C1 | 120.1° | 120.2° |
| N6 | C6 | C5 | 123.5° | 120.2° |
| C6 | N6 | H3 | 109.5° | 120.0° |
| C6 | N6 | H4 | 109.5° | 120.0° |
| C3' | C2' | C1' | 102.3° | 104.1° |
| C3' | C2' | H13 | 110.4° | 110.5° |
| C2' | C3' | H16 | 109.6° | 110.5° |
| C2' | C1' | O4' | 107.5° | 104.8° |
| C2' | C1' | N7 | 115.4° | 110.4° |
| C2' | C1' | H12 | 107.7° | 110.4° |
| C1' | C2' | H13 | 110.5° | 110.5° |
| OD1 | CG | CB | 118.4° | 120.0° |
| OD1 | CG | OD2 | 124.7° | 120.0° |
| O4' | C1' | N7 | 108.2° | 110.4° |
| O4' | C1' | H12 | 109.2° | 110.4° |
| C1' | N7 | C5 | 128.0° | 126.4° |
| C1' | N7 | C8 | 126.4° | 126.4° |
| N7 | C1' | H12 | 108.7° | 110.3° |
| C5' | O5' | S | 118.9° | 114.0° |
| O5' | C5' | H18 | 110.3° | 109.4° |
| O5' | C5' | H19 | 110.3° | 109.5° |
| CB | CG | OD2 | 116.9° | 120.0° |
| CG | CB | CA | 114.2° | 109.5° |
| CG | CB | H9 | 108.3° | 109.5° |
| CG | CB | H10 | 108.3° | 109.5° |
| CG | OD2 | H11 | 109.5° | 117.0° |
| C1 | C6 | C5 | 116.4° | 119.6° |
| C6 | C1 | C2 | 122.8° | 120.3° |
| C6 | C1 | H1 | 118.6° | 119.9° |
| C6 | C5 | N7 | 132.5° | 134.2° |
| C6 | C5 | C4 | 121.5° | 119.8° |
| CB | CA | C | 111.1° | 109.4° |
| CB | CA | N | 115.2° | 109.5° |
| CB | CA | H8 | 108.4° | 109.4° |
| CA | CB | H9 | 108.3° | 109.5° |
| CA | CB | H10 | 108.3° | 109.5° |
| C5 | N7 | C8 | 105.4° | 107.3° |
| N7 | C5 | C4 | 106.0° | 106.1° |
| N7 | C8 | N9 | 114.4° | 110.1° |
| N7 | C8 | H20 | 122.8° | 124.9° |
| O5' | S | O2S | 105.8° | 106.4° |
| O5' | S | N3S | 110.3° | 107.3° |
| O5' | S | O1S | 106.4° | 106.4° |
| C1 | C2 | C2M | 120.2° | 119.7° |
| C1 | C2 | C3 | 119.4° | 120.7° |
| C2 | C1 | H1 | 118.6° | 119.8° |
| C5 | C4 | N9 | 109.9° | 106.9° |
| C5 | C4 | C3 | 120.3° | 119.5° |
| O2S | S | N3S | 107.0° | 106.4° |
| O2S | S | O1S | 121.8° | 123.1° |
| S | N3S | C | 126.0° | 120.0° |
| N3S | S | O1S | 105.4° | 106.4° |
| S | N3S | H21 | 117.0° | 120.0° |
| N3S | C | CA | 116.4° | 120.0° |
| N3S | C | O | 120.6° | 120.0° |
| C | N3S | H21 | 117.0° | 120.1° |
| C | CA | N | 104.0° | 109.5° |
| CA | C | O | 122.9° | 120.0° |
| C | CA | H8 | 108.5° | 109.5° |
| CA | N | H5 | 109.5° | 111.0° |
| CA | N | H6 | 109.5° | 111.0° |
| N | CA | H8 | 109.3° | 109.5° |
| C8 | N9 | C4 | 104.4° | 109.7° |
| N9 | C8 | H20 | 122.8° | 124.9° |
| C2M | C2 | C3 | 120.4° | 119.6° |
| C2 | C2M | O2M | 113.1° | 109.5° |
| C2 | C2M | H14 | 108.5° | 109.5° |
| C2 | C2M | H15 | 108.6° | 109.5° |
| C2 | C3 | C4 | 119.6° | 120.0° |
| C2 | C3 | H2 | 120.2° | 120.0° |
| N9 | C4 | C3 | 129.8° | 133.6° |
| C4 | C3 | H2 | 120.2° | 120.0° |
| O2M | C2M | H14 | 108.6° | 109.5° |
| O2M | C2M | H15 | 108.6° | 109.5° |
| C2M | O2M | H23 | 109.5° | 114.0° |
| H3 | N6 | H4 | 109.5° | 120.0° |
| H5 | N | H6 | 109.5° | 111.0° |
| H9 | CB | H10 | 109.5° | 109.4° |
| H14 | C2M | H15 | 109.5° | 109.5° |
| H18 | C5' | H19 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2' | C2' | C3' | O3' | 32.6° | 0.2° |
| O2' | C2' | C3' | C4' | 84.2° | 118.6° |
| O2' | C2' | C3' | C1' | 116.1° | 118.6° |
| O2' | C2' | C3' | H13 | 126.3° | 122.7° |
| O2' | C2' | C1' | H13 | 123.3° | 122.7° |
| O2' | C2' | C1' | O4' | 103.5° | 142.6° |
| O2' | C2' | C1' | N7 | 135.7° | 98.5° |
| O2' | C2' | C1' | H12 | 14.1° | 23.7° |
| O2' | C2' | C3' | H16 | 159.3° | 122.7° |
| O3' | C3' | C4' | C2' | 122.4° | 118.7° |
| O3' | C3' | C4' | H16 | 121.3° | 122.7° |
| O3' | C3' | C4' | C5' | 80.9° | 98.5° |
| O3' | C3' | C4' | O4' | 160.0° | 142.6° |
| O3' | C3' | C2' | H16 | 126.7° | 122.6° |
| O3' | C3' | C2' | C1' | 148.7° | 118.8° |
| O3' | C3' | C2' | H13 | 93.7° | 122.6° |
| O3' | C3' | C4' | H17 | 42.0° | 23.7° |
| C3' | C4' | C5' | O4' | 116.0° | 115.4° |
| C3' | C4' | C5' | H17 | 122.9° | 122.2° |
| C3' | C4' | O4' | H17 | 117.2° | 118.9° |
| C4' | C3' | C2' | H16 | 116.5° | 118.6° |
| C4' | C3' | C2' | C1' | 31.9° | 0.0° |
| C3' | C4' | O4' | C1' | 28.9° | 40.5° |
| C3' | C4' | C5' | O5' | 70.6° | 174.9° |
| C4' | C3' | C2' | H13 | 149.5° | 118.6° |
| C3' | C4' | C5' | H18 | 169.9° | 55.0° |
| C3' | C4' | C5' | H19 | 48.9° | 65.0° |
| C4' | C3' | O3' | H24 | 180.0° | 176.1° |
| C5' | C4' | O4' | H17 | 120.5° | 122.3° |
| C5' | C4' | C3' | C2' | 156.6° | 142.8° |
| C5' | C4' | O4' | C1' | 151.2° | 159.3° |
| C4' | C5' | O5' | H18 | 119.5° | 120.0° |
| C4' | C5' | O5' | H19 | 119.5° | 120.0° |
| C4' | C5' | O5' | S | 129.3° | 180.0° |
| C5' | C4' | C3' | H16 | 40.3° | 24.2° |
| C4' | C5' | H18 | H19 | 121.5° | 120.0° |
| O4' | C4' | C3' | C2' | 37.6° | 24.0° |
| C4' | O4' | C1' | C2' | 8.0° | 40.5° |
| C4' | O4' | C1' | N7 | 133.3° | 159.3° |
| O4' | C4' | C5' | O5' | 45.5° | 69.6° |
| C4' | O4' | C1' | H12 | 108.6° | 78.4° |
| O4' | C4' | C3' | H16 | 78.8° | 94.6° |
| O4' | C4' | C5' | H18 | 74.0° | 170.4° |
| O4' | C4' | C5' | H19 | 165.0° | 50.4° |
| N6 | C6 | C1 | C5 | 178.7° | 179.4° |
| N6 | C6 | C5 | N7 | 1.8° | 0.4° |
| N6 | C6 | C1 | C2 | 179.5° | 180.0° |
| N6 | C6 | C5 | C4 | 179.7° | 180.0° |
| N6 | C6 | C1 | H1 | 0.5° | 0.3° |
| C6 | N6 | H3 | H4 | 120.0° | 179.9° |
| C3' | C2' | C1' | H13 | 117.6° | 118.6° |
| C3' | C2' | C1' | O4' | 15.7° | 23.9° |
| C3' | C2' | C1' | N7 | 105.1° | 142.8° |
| C3' | C2' | C1' | H12 | 133.3° | 94.9° |
| C2' | C3' | C4' | H17 | 80.4° | 95.0° |
| C3' | C2' | O2' | H22 | 180.0° | 61.4° |
| C2' | C3' | O3' | H24 | 66.2° | 61.5° |
| C2' | C1' | O4' | N7 | 125.2° | 118.8° |
| C2' | C1' | O4' | H12 | 116.6° | 118.9° |
| C2' | C1' | N7 | H12 | 121.1° | 122.3° |
| C2' | C1' | N7 | C5 | 105.2° | 89.9° |
| C2' | C1' | N7 | C8 | 82.0° | 90.1° |
| C1' | C2' | C3' | H16 | 84.6° | 118.6° |
| C1' | C2' | O2' | H22 | 67.6° | 176.1° |
| OD1 | CG | CB | OD2 | 179.3° | 180.0° |
| OD1 | CG | CB | CA | 144.2° | 0.0° |
| OD1 | CG | CB | H9 | 95.1° | 120.0° |
| OD1 | CG | CB | H10 | 23.6° | 120.1° |
| OD1 | CG | OD2 | H11 | 0.0° | 0.0° |
| O4' | C1' | N7 | H12 | 118.5° | 122.3° |
| O4' | C1' | N7 | C5 | 134.4° | 154.7° |
| O4' | C1' | N7 | C8 | 38.5° | 25.3° |
| O4' | C1' | C2' | H13 | 133.3° | 94.7° |
| C1' | O4' | C4' | H17 | 88.3° | 78.4° |
| C1' | N7 | C5 | C6 | 5.5° | 0.3° |
| C1' | N7 | C5 | C8 | 174.0° | 180.0° |
| C1' | N7 | C5 | C4 | 172.7° | 180.0° |
| C1' | N7 | C8 | N9 | 172.8° | 180.0° |
| N7 | C1' | C2' | H13 | 12.5° | 24.2° |
| C1' | N7 | C8 | H20 | 7.2° | 0.0° |
| C5' | O5' | S | O2S | 53.8° | 171.5° |
| C5' | O5' | S | N3S | 61.6° | 74.9° |
| C5' | O5' | S | O1S | 175.3° | 38.6° |
| O5' | C5' | C4' | H17 | 166.5° | 52.7° |
| O5' | C5' | H18 | H19 | 121.5° | 120.0° |
| CG | CB | CA | H9 | 120.7° | 120.0° |
| CG | CB | CA | H10 | 120.7° | 120.0° |
| CG | CB | CA | C | 164.0° | 175.0° |
| CG | CB | CA | N | 78.1° | 65.0° |
| CG | CB | CA | H8 | 44.8° | 55.0° |
| CG | CB | H9 | H10 | 117.9° | 120.0° |
| CB | CG | OD2 | H11 | 179.2° | 180.0° |
| OD2 | CG | CB | CA | 36.5° | 180.0° |
| OD2 | CG | CB | H9 | 84.2° | 60.0° |
| OD2 | CG | CB | H10 | 157.2° | 60.0° |
| C1 | C6 | C5 | N7 | 176.8° | 179.8° |
| C6 | C1 | C2 | H1 | 180.0° | 179.7° |
| C1 | C6 | C5 | C4 | 1.1° | 0.6° |
| C6 | C1 | C2 | C2M | 179.0° | 179.8° |
| C6 | C1 | C2 | C3 | 0.0° | 0.3° |
| C1 | C6 | N6 | H3 | 180.0° | 7.1° |
| C1 | C6 | N6 | H4 | 60.0° | 173.0° |
| C6 | C5 | N7 | C4 | 178.1° | 179.6° |
| C6 | C5 | N7 | C8 | 179.5° | 179.6° |
| C5 | C6 | C1 | C2 | 0.8° | 0.6° |
| C6 | C5 | C4 | N9 | 179.4° | 179.7° |
| C6 | C5 | C4 | C3 | 0.7° | 0.3° |
| C5 | C6 | C1 | H1 | 179.2° | 179.7° |
| C5 | C6 | N6 | H3 | 1.5° | 173.5° |
| C5 | C6 | N6 | H4 | 118.6° | 6.4° |
| CB | CA | C | N3S | 76.7° | 80.0° |
| CB | CA | C | N | 124.6° | 120.0° |
| CB | CA | C | H8 | 119.2° | 120.0° |
| CB | CA | N | H8 | 122.4° | 120.0° |
| CB | CA | C | O | 103.6° | 100.0° |
| CB | CA | N | H5 | 180.0° | 60.0° |
| CB | CA | N | H6 | 60.0° | 64.0° |
| CA | CB | H9 | H10 | 117.8° | 120.0° |
| C5 | N7 | C8 | N9 | 1.4° | 0.0° |
| N7 | C5 | C4 | N9 | 1.0° | 0.0° |
| N7 | C5 | C4 | C3 | 177.7° | 180.0° |
| C5 | N7 | C1' | H12 | 15.9° | 32.4° |
| C5 | N7 | C8 | H20 | 178.6° | 180.0° |
| C8 | N7 | C5 | C4 | 1.4° | 0.0° |
| N7 | C8 | N9 | H20 | 180.0° | 180.0° |
| N7 | C8 | N9 | C4 | 0.8° | 0.0° |
| C8 | N7 | C1' | H12 | 156.9° | 147.6° |
| O5' | S | O2S | N3S | 117.6° | 114.2° |
| O5' | S | O2S | O1S | 121.3° | 122.9° |
| O5' | S | N3S | O1S | 114.4° | 113.6° |
| O5' | S | N3S | C | 59.0° | 65.0° |
| S | O5' | C5' | H18 | 111.2° | 60.1° |
| S | O5' | C5' | H19 | 9.8° | 59.9° |
| O5' | S | N3S | H21 | 121.0° | 115.0° |
| C1 | C2 | C2M | C3 | 178.9° | 180.0° |
| C1 | C2 | C3 | C4 | 0.6° | 0.0° |
| C1 | C2 | C2M | O2M | 155.9° | 90.0° |
| C1 | C2 | C3 | H2 | 179.5° | 180.0° |
| C1 | C2 | C2M | H14 | 35.4° | 150.0° |
| C1 | C2 | C2M | H15 | 83.6° | 30.0° |
| C5 | C4 | N9 | C8 | 0.1° | 0.0° |
| C5 | C4 | C3 | C2 | 0.2° | 0.0° |
| C5 | C4 | N9 | C3 | 178.6° | 180.0° |
| C5 | C4 | C3 | H2 | 179.8° | 180.0° |
| O2S | S | N3S | O1S | 131.0° | 132.9° |
| O2S | S | N3S | C | 173.6° | 48.6° |
| O2S | S | N3S | H21 | 6.4° | 131.4° |
| S | N3S | C | H21 | 180.0° | 180.0° |
| S | N3S | C | CA | 178.8° | 180.0° |
| S | N3S | C | O | 0.9° | 0.0° |
| N3S | C | CA | O | 179.7° | 179.9° |
| N3S | C | CA | N | 158.7° | 160.0° |
| C | N3S | S | O1S | 55.4° | 178.6° |
| N3S | C | CA | H8 | 42.4° | 40.0° |
| C | CA | N | H8 | 115.8° | 120.1° |
| C | CA | N | H5 | 58.1° | 59.9° |
| C | CA | N | H6 | 61.9° | 176.0° |
| C | CA | CB | H9 | 43.3° | 65.0° |
| C | CA | CB | H10 | 75.3° | 55.0° |
| CA | C | N3S | H21 | 1.2° | 0.0° |
| N | CA | C | O | 21.0° | 19.9° |
| CA | N | H5 | H6 | 120.0° | 124.0° |
| N | CA | CB | H9 | 161.2° | 55.0° |
| N | CA | CB | H10 | 42.6° | 175.0° |
| O1S | S | N3S | H21 | 124.6° | 1.4° |
| C8 | N9 | C4 | C3 | 178.4° | 180.0° |
| O | C | CA | H8 | 137.3° | 140.0° |
| O | C | N3S | H21 | 179.1° | 180.0° |
| C2M | C2 | C3 | C4 | 179.5° | 180.0° |
| C2 | C2M | O2M | H14 | 120.5° | 120.0° |
| C2 | C2M | O2M | H15 | 120.5° | 120.0° |
| C2M | C2 | C1 | H1 | 1.0° | 0.1° |
| C2M | C2 | C3 | H2 | 0.5° | 0.0° |
| C2 | C2M | H14 | H15 | 118.4° | 120.0° |
| C2 | C2M | O2M | H23 | 180.0° | 180.0° |
| C2 | C3 | C4 | N9 | 178.2° | 180.0° |
| C2 | C3 | C4 | H2 | 180.0° | 180.0° |
| C3 | C2 | C2M | O2M | 23.0° | 90.0° |
| C3 | C2 | C1 | H1 | 180.0° | 180.0° |
| C3 | C2 | C2M | H14 | 143.6° | 30.0° |
| C3 | C2 | C2M | H15 | 97.5° | 150.0° |
| N9 | C4 | C3 | H2 | 1.8° | 0.0° |
| C4 | N9 | C8 | H20 | 179.2° | 180.0° |
| O2M | C2M | H14 | H15 | 118.4° | 120.0° |
| H5 | N | CA | H8 | 57.6° | 180.0° |
| H6 | N | CA | H8 | 177.6° | 56.0° |
| H8 | CA | CB | H9 | 75.9° | 175.0° |
| H8 | CA | CB | H10 | 165.4° | 65.0° |
| H12 | C1' | C2' | H13 | 109.1° | 146.4° |
| H13 | C2' | C3' | H16 | 33.0° | 0.0° |
| H13 | C2' | O2' | H22 | 54.7° | 61.3° |
| H14 | C2M | O2M | H23 | 59.5° | 60.0° |
| H15 | C2M | O2M | H23 | 59.5° | 60.0° |
| H16 | C3' | C4' | H17 | 163.3° | 146.4° |
| H16 | C3' | O3' | H24 | 59.6° | 61.1° |
| H17 | C4' | C5' | H18 | 47.0° | 67.2° |
| H17 | C4' | C5' | H19 | 74.0° | 172.8° |
