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RGT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2PPsing1.61Å1.55Å
O2PHO2Psing0.97Å0.95Å
O3PPdoub1.48Å1.54Å
O5RPsing1.61Å1.63Å
PO1Psing1.61Å1.55Å
O1PHO1Psing0.97Å0.95Å
C5RO5Rsing1.43Å1.45Å
C4RC5Rsing1.53Å1.53Å
C5RH5Rsing1.09Å1.10Å
C5RH5RAsing1.09Å1.10Å
O4RC4Rsing1.44Å1.43Å
C3RC4Rsing1.54Å1.53Å
C4RH4Rsing1.09Å1.10Å
C1RO4Rsing1.44Å1.43Å
C2RC3Rsing1.55Å1.52Å
O3RC3Rsing1.43Å1.43Å
C3RH3Rsing1.09Å1.10Å
O3RHO3Rsing0.97Å0.95Å
O2RC2Rsing1.43Å1.43Å
C1RC2Rsing1.55Å1.52Å
C2RH2Rsing1.09Å1.10Å
O2RHO2Rsing0.97Å0.95Å
C1RO6sing1.43Å1.93Å
C1RH1Rsing1.09Å1.10Å
O6C6sing1.35Å1.24Å
C6C5doub1.40Å1.36ÅAromatic
C6N1sing1.33Å1.39ÅAromatic
N7C5sing1.36Å1.34ÅAromatic
C5C4sing1.40Å1.39ÅAromatic
C4N9sing1.37Å1.37ÅAromatic
C4N3doub1.33Å1.38ÅAromatic
C2N3sing1.32Å1.37ÅAromatic
N1C2doub1.33Å1.39ÅAromatic
C2N2sing1.39Å1.35Å
N2HN2sing0.97Å1.00Å
N2HN2Asing0.97Å1.00Å
N7C8doub1.30Å1.37ÅAromatic
C8N9sing1.36Å1.39ÅAromatic
C8H8sing1.08Å1.08Å
N9C1'sing1.47Å1.47Å
C2'C1'sing1.54Å1.52Å
C1'O4'sing1.44Å1.42Å
C1'H1'sing1.09Å1.10Å
O2'C2'sing1.43Å1.42Å
C2'C3'sing1.55Å1.51Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O3'C3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.53Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
O4'C4'sing1.44Å1.43Å
C4'C5'sing1.53Å1.53Å
C4'H4'sing1.09Å1.10Å
O5'C5'sing1.43Å1.41Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
O5'PAsing1.61Å1.62Å
O2APAdoub1.48Å1.52Å
PAO3Asing1.61Å1.61Å
PAO1Asing1.61Å1.52Å
O1AHO1Asing0.97Å0.95Å
PBO3Asing1.61Å1.61Å
O1BPBdoub1.48Å1.52Å
O2BPBsing1.61Å1.53Å
PBO3Bsing1.61Å1.63Å
O2BHO2Bsing0.97Å0.95Å
PGO3Bsing1.61Å1.62Å
O3GPGdoub1.48Å1.52Å
PGO1Gsing1.61Å1.52Å
PGO2Gsing1.61Å1.52Å
O1GHO1Gsing0.97Å0.95Å
O2GHO2Gsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
PO2PHO2P109.5°114.0°
O2PPO3P116.3°109.5°
O2PPO5R104.1°109.5°
O2PPO1P113.0°109.5°
O3PPO5R102.3°109.5°
O3PPO1P115.2°109.4°
O5RPO1P103.7°109.5°
PO5RC5R122.9°123.0°
PO1PHO1P109.5°114.0°
O5RC5RC4R113.5°109.5°
O5RC5RH5R108.1°109.5°
O5RC5RH5RA107.2°109.5°
C4RC5RH5R108.2°109.5°
C4RC5RH5RA107.3°109.5°
C5RC4RO4R108.4°109.9°
C5RC4RC3R113.7°109.9°
C5RC4RH4R106.3°109.9°
H5RC5RH5RA112.6°109.4°
O4RC4RC3R106.0°107.5°
O4RC4RH4R114.0°109.9°
C4RO4RC1R112.6°106.9°
C3RC4RH4R108.7°109.8°
C4RC3RC2R107.2°104.1°
C4RC3RO3R110.0°110.5°
C4RC3RH3R109.6°110.5°
O4RC1RC2R107.5°103.5°
O4RC1RO677.1°110.6°
O4RC1RH1R133.7°110.6°
C2RC3RO3R106.4°110.6°
C2RC3RH3R113.1°110.4°
C3RC2RO2R106.3°110.9°
C3RC2RC1R105.2°102.1°
C3RC2RH2R112.8°110.9°
O3RC3RH3R110.4°110.5°
C3RO3RHO3R109.5°114.0°
O2RC2RC1R105.2°111.0°
O2RC2RH2R112.8°110.8°
C2RO2RHO2R109.5°114.0°
C1RC2RH2R113.7°110.9°
C2RC1RO6122.1°110.7°
C2RC1RH1R97.2°110.5°
O6C1RH1R121.2°110.6°
C1RO6C6149.8°117.0°
O6C6C5117.5°120.7°
O6C6N1122.8°120.7°
C5C6N1119.7°118.6°
C6C5N7131.4°134.6°
C6C5C4117.8°118.3°
C6N1C2122.6°121.2°
N7C5C4110.7°107.1°
C5N7C8107.3°109.4°
C5C4N9105.4°106.0°
C5C4N3122.7°119.2°
N9C4N3131.8°134.8°
C4N9C8108.6°107.4°
C4N9C1'120.8°126.3°
C4N3C2119.5°120.5°
N3C2N1117.6°122.2°
N3C2N2121.4°118.9°
N1C2N2121.0°118.9°
C2N2HN2109.5°119.9°
C2N2HN2A109.5°120.1°
HN2N2HN2A109.5°120.0°
N7C8N9107.9°110.0°
N7C8H8126.1°125.0°
N9C8H8126.0°125.0°
C8N9C1'130.5°126.3°
N9C1'C2'115.2°110.4°
N9C1'O4'114.2°110.4°
N9C1'H1'100.5°110.3°
C2'C1'O4'104.9°104.8°
C2'C1'H1'110.5°110.5°
C1'C2'O2'112.9°110.5°
C1'C2'C3'97.3°104.1°
C1'C2'H2'116.7°110.5°
O4'C1'H1'111.7°110.4°
C1'O4'C4'106.5°105.3°
O2'C2'C3'114.0°110.5°
O2'C2'H2'100.9°110.5°
C2'O2'HO2'109.5°114.0°
C3'C2'H2'115.7°110.5°
C2'C3'O3'107.4°110.5°
C2'C3'C4'102.7°104.0°
C2'C3'H3'114.4°110.5°
O3'C3'C4'107.7°110.5°
O3'C3'H3'110.0°110.6°
C3'O3'HO3'109.5°114.0°
C4'C3'H3'114.1°110.5°
C3'C4'O4'106.3°104.8°
C3'C4'C5'113.3°110.4°
C3'C4'H4'110.1°110.3°
O4'C4'C5'112.2°110.4°
O4'C4'H4'111.1°110.4°
C5'C4'H4'103.9°110.4°
C4'C5'O5'110.1°109.5°
C4'C5'H5'109.3°109.5°
C4'C5'H5'A109.1°109.4°
O5'C5'H5'109.3°109.5°
O5'C5'H5'A109.1°109.5°
C5'O5'PA122.0°123.0°
H5'C5'H5'A109.9°109.5°
O5'PAO2A109.2°109.5°
O5'PAO3A104.8°109.4°
O5'PAO1A111.8°109.5°
O2APAO3A110.5°109.5°
O2APAO1A113.0°109.5°
O3APAO1A107.3°109.5°
PAO3APB121.4°134.0°
PAO1AHO1A109.5°114.0°
O3APBO1B110.4°109.5°
O3APBO2B111.0°109.5°
O3APBO3B100.9°109.5°
O1BPBO2B111.5°109.5°
O1BPBO3B110.3°109.5°
O2BPBO3B112.3°109.5°
PBO2BHO2B109.5°114.0°
PBO3BPG122.6°134.0°
O3BPGO3G110.3°109.4°
O3BPGO1G106.5°109.5°
O3BPGO2G110.2°109.5°
O3GPGO1G110.7°109.5°
O3GPGO2G109.2°109.5°
O1GPGO2G109.9°109.5°
PGO1GHO1G109.5°114.0°
PGO2GHO2G109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2PPO3PO5R112.7°120.0°
O2PPO3PO1P135.6°120.0°
O2PPO5RO1P118.4°120.0°
O2PPO1PHO1P21.2°60.0°
O2PPO5RC5R179.4°175.0°
HO2PO2PPO3P53.0°60.0°
HO2PO2PPO5R58.7°180.0°
HO2PO2PPO1P170.5°60.0°
O3PPO5RO1P120.1°120.0°
O3PPO1PHO1P115.8°180.0°
O3PPO5RC5R57.9°55.0°
O5RPO1PHO1P133.3°60.0°
PO5RC5RC4R110.1°180.0°
PO5RC5RH5R129.9°60.0°
PO5RC5RH5RA8.2°60.0°
O1PPO5RC5R62.2°65.0°
O5RC5RC4RH5R120.0°120.0°
O5RC5RC4RH5RA118.2°120.0°
O5RC5RH5RH5RA118.3°120.0°
O5RC5RC4RO4R55.0°66.7°
O5RC5RC4RC3R172.5°175.3°
O5RC5RC4RH4R67.9°54.3°
C4RC5RH5RH5RA118.4°120.0°
C5RC4RO4RC3R122.4°119.5°
C5RC4RO4RH4R118.1°121.0°
C5RC4RC3RH4R118.2°121.0°
C5RC4RO4RC1R123.6°145.9°
C5RC4RC3RC2R112.4°121.5°
C5RC4RC3RO3R132.2°119.7°
C5RC4RC3RH3R10.7°2.9°
H5RC5RC4RO4R65.0°53.3°
H5RC5RC4RC3R52.5°64.7°
H5RC5RC4RH4R172.1°174.3°
H5RAC5RC4RO4R173.2°173.3°
H5RAC5RC4RC3R69.2°55.3°
H5RAC5RC4RH4R50.3°65.7°
O4RC4RC3RH4R122.9°119.5°
O4RC4RC3RC2R6.5°1.9°
O4RC4RC3RO3R108.9°120.7°
O4RC4RC3RH3R129.6°116.7°
C4RO4RC1RC2R8.5°39.9°
C4RO4RC1RO6128.5°158.6°
C4RO4RC1RH1R110.4°78.5°
C3RC4RO4RC1R1.2°26.4°
C4RC3RC2RO3R117.7°118.7°
C4RC3RC2RH3R120.9°118.6°
C4RC3RO3RH3R121.1°122.6°
C4RC3RO3RHO3R84.9°180.0°
C4RC3RC2RO2R122.5°139.2°
C4RC3RC2RC1R11.2°20.9°
C4RC3RC2RH2R113.3°97.3°
H4RC4RO4RC1R118.2°93.1°
H4RC4RC3RC2R129.4°117.6°
H4RC4RC3RO3R14.1°1.2°
H4RC4RC3RH3R107.5°123.8°
O4RC1RC2RC3R12.0°37.0°
O4RC1RC2RO2R124.0°155.2°
O4RC1RC2RO685.5°118.5°
O4RC1RC2RH1R140.4°118.5°
O4RC1RC2RH2R112.0°81.2°
O4RC1RO6H1R133.6°122.9°
O4RC1RO6C695.2°66.4°
C2RC3RO3RH3R123.0°122.6°
C2RC3RO3RHO3R159.3°65.2°
C3RC2RO2RC1R111.3°112.7°
C3RC2RO2RH2R124.1°123.6°
C3RC2RC1RH2R124.0°118.2°
C3RC2RO2RHO2R80.9°180.0°
C3RC2RC1RO697.5°155.5°
C3RC2RC1RH1R128.4°81.5°
O3RC3RC2RO2R4.8°20.4°
O3RC3RC2RC1R106.5°97.8°
O3RC3RC2RH2R128.9°144.0°
H3RC3RO3RHO3R36.3°57.4°
H3RC3RC2RO2R116.5°102.2°
H3RC3RC2RC1R132.1°139.5°
H3RC3RC2RH2R7.6°21.3°
O2RC2RC1RH2R124.0°123.6°
O2RC2RC1RO6150.5°86.3°
O2RC2RC1RH1R16.3°36.7°
C1RC2RO2RHO2R167.8°67.3°
C2RC1RO6H1R123.6°122.9°
C2RC1RO6C67.5°179.5°
H2RC2RO2RHO2R43.2°56.4°
H2RC2RC1RO626.5°37.4°
H2RC2RC1RH1R107.7°160.3°
C1RO6C6C5140.7°180.0°
C1RO6C6N139.9°0.3°
H1RC1RO6C6131.1°56.5°
O6C6C5N1179.5°179.7°
O6C6C5N70.9°0.1°
O6C6C5C4179.6°180.0°
O6C6N1C2179.0°179.7°
C6C5N7C4179.5°180.0°
C6C5C4N9179.9°180.0°
C6C5C4N30.0°0.0°
C5C6N1C21.6°0.7°
C6C5N7C8179.6°180.0°
N1C6C5N7178.5°179.7°
N1C6C5C41.0°0.3°
C6N1C2N31.2°0.7°
C6N1C2N2179.8°179.7°
N7C5C4N90.3°0.0°
N7C5C4N3179.6°180.0°
C5N7C8N90.1°0.0°
C5N7C8H8179.9°180.0°
C5C4N9N3179.9°180.0°
C5C4N3C20.4°0.0°
C4C5N7C80.1°0.0°
C5C4N9C80.4°0.0°
C5C4N9C1'178.9°180.0°
N9C4N3C2179.5°180.0°
C4N9C8N70.3°0.0°
C4N9C8C1'178.3°180.0°
C4N9C8H8179.7°180.0°
C4N9C1'C2'169.0°88.2°
C4N9C1'O4'69.4°156.5°
C4N9C1'H1'50.2°34.2°
C4N3C2N10.2°0.3°
C4N3C2N2179.2°180.0°
N3C4N9C8179.5°180.0°
N3C4N9C1'1.0°0.0°
N3C2N1N2179.0°179.6°
N3C2N2HN231.8°0.0°
N3C2N2HN2A151.9°180.0°
N1C2N2HN2149.2°179.6°
N1C2N2HN2A29.1°0.4°
C2N2HN2HN2A120.0°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1'178.6°180.0°
C8N9C1'C2'9.2°91.8°
C8N9C1'O4'112.4°23.6°
C8N9C1'H1'127.9°145.8°
H8C8N9C1'1.3°0.0°
N9C1'C2'O4'126.5°118.8°
N9C1'C2'H1'113.0°122.3°
N9C1'O4'H1'113.1°122.2°
N9C1'C2'O2'67.0°98.5°
N9C1'C2'C3'173.0°142.8°
N9C1'C2'H2'49.3°24.2°
N9C1'O4'C4'161.3°159.4°
C2'C1'O4'H1'119.7°119.0°
C1'C2'O2'C3'109.9°114.7°
C1'C2'O2'H2'125.4°122.7°
C1'C2'C3'H2'124.4°118.7°
C1'C2'O2'HO2'88.6°180.0°
C1'C2'C3'O3'73.3°118.6°
C1'C2'C3'C4'40.1°0.0°
C1'C2'C3'H3'164.3°118.6°
C2'C1'O4'C4'34.2°40.5°
O4'C1'C2'O2'166.5°142.7°
O4'C1'C2'C3'46.5°24.0°
O4'C1'C2'H2'77.2°94.7°
C1'O4'C4'C3'7.2°40.5°
C1'O4'C4'C5'131.5°159.4°
C1'O4'C4'H4'112.6°78.3°
H1'C1'C2'O2'46.0°23.7°
H1'C1'C2'C3'74.0°94.9°
H1'C1'C2'H2'162.3°146.4°
H1'C1'O4'C4'85.5°78.4°
O2'C2'C3'H2'116.4°122.6°
O2'C2'C3'O3'45.9°0.1°
O2'C2'C3'C4'159.3°118.7°
O2'C2'C3'H3'76.5°122.7°
C3'C2'O2'HO2'161.5°65.3°
C2'C3'O3'C4'110.0°114.6°
C2'C3'O3'H3'125.1°122.8°
C2'C3'C4'H3'124.4°118.6°
C2'C3'O3'HO3'15.8°61.5°
C2'C3'C4'O4'22.4°24.0°
C2'C3'C4'C5'101.3°142.8°
C2'C3'C4'H4'142.9°94.9°
H2'C2'O2'HO2'36.8°57.3°
H2'C2'C3'O3'162.3°122.7°
H2'C2'C3'C4'84.3°118.7°
H2'C2'C3'H3'39.9°0.1°
O3'C3'C4'H3'122.4°122.8°
O3'C3'C4'O4'90.8°142.6°
O3'C3'C4'C5'145.5°98.5°
O3'C3'C4'H4'29.7°23.7°
C4'C3'O3'HO3'125.8°176.1°
C3'C4'O4'C5'124.4°118.9°
C3'C4'O4'H4'119.8°118.8°
C3'C4'C5'H4'119.4°122.2°
C3'C4'C5'O5'62.4°175.0°
C3'C4'C5'H5'177.5°54.9°
C3'C4'C5'H5'A57.3°65.0°
H3'C3'O3'HO3'109.3°61.2°
H3'C3'C4'O4'146.8°94.6°
H3'C3'C4'C5'23.1°24.2°
H3'C3'C4'H4'92.7°146.5°
O4'C4'C5'H4'120.1°122.3°
O4'C4'C5'O5'58.0°69.6°
O4'C4'C5'H5'62.0°170.3°
O4'C4'C5'H5'A177.7°50.4°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A119.8°119.9°
C4'C5'H5'H5'A119.8°119.9°
C4'C5'O5'PA157.5°180.0°
H4'C4'C5'O5'178.1°52.7°
H4'C4'C5'H5'58.1°67.3°
H4'C4'C5'H5'A62.1°172.7°
O5'C5'H5'H5'A119.7°120.0°
C5'O5'PAO2A144.8°55.0°
C5'O5'PAO3A96.9°175.0°
C5'O5'PAO1A19.0°65.0°
H5'C5'O5'PA37.5°60.0°
H5'AC5'O5'PA82.7°60.0°
O5'PAO2AO3A114.7°120.0°
O5'PAO2AO1A125.0°120.0°
O5'PAO3AO1A118.9°120.0°
O5'PAO1AHO1A114.2°59.9°
O5'PAO3APB62.7°165.0°
O2APAO3AO1A123.6°120.0°
O2APAO1AHO1A122.1°180.0°
O2APAO3APB54.7°45.0°
O3APAO1AHO1A0.1°60.0°
PAO3APBO1B60.1°45.0°
PAO3APBO2B64.0°75.0°
PAO3APBO3B176.7°165.0°
O1APAO3APB178.4°75.0°
O3APBO1BO2B123.9°120.0°
O3APBO1BO3B110.6°120.0°
O3APBO2BO3B112.2°120.0°
O3APBO2BHO2B127.0°60.0°
O3APBO3BPG173.2°160.0°
O1BPBO2BO3B124.3°120.0°
O1BPBO2BHO2B3.4°180.0°
O1BPBO3BPG70.1°40.0°
O2BPBO3BPG54.9°80.0°
O3BPBO2BHO2B120.9°60.0°
PBO3BPGO3G4.5°40.0°
PBO3BPGO1G124.6°160.0°
PBO3BPGO2G116.2°80.0°
O3BPGO3GO1G117.6°120.0°
O3BPGO3GO2G121.3°120.0°
O3BPGO1GO2G119.4°120.0°
O3BPGO1GHO1G71.4°180.0°
O3BPGO2GHO2G114.9°60.0°
O3GPGO1GO2G120.7°120.0°
O3GPGO1GHO1G168.7°60.0°
O3GPGO2GHO2G6.4°180.0°
O1GPGO2GHO2G128.0°60.0°
O2GPGO1GHO1G48.0°60.0°

226262

PDB entries from 2024-10-16

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