English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

PQR

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3	N3	doub	1.22Å	1.39Å
N3	N2	sing	1.29Å	1.33Å
N2	C10	sing	1.46Å	1.46Å
N2	C9	sing	1.40Å	1.41Å
C4	C9	doub	1.39Å	1.49Å	Aromatic
C4	C5	sing	1.38Å	1.39Å	Aromatic
C9	C8	sing	1.39Å	1.39Å	Aromatic
C5	C6	doub	1.39Å	1.38Å	Aromatic
C8	C7	doub	1.38Å	1.39Å	Aromatic
C6	C7	sing	1.39Å	1.49Å	Aromatic
C6	O5	sing	1.36Å	1.25Å
C7	O4	sing	1.36Å	1.25Å
C10	H4	sing	1.09Å	1.10Å
C10	H5	sing	1.09Å	1.10Å
C10	H6	sing	1.09Å	1.10Å
C5	H7	sing	1.08Å	1.08Å
O5	H2	sing	0.97Å	0.95Å
O4	H15	sing	0.97Å	0.95Å
C4	H8	sing	1.08Å	1.08Å
C8	H1	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3	N3	N2	118.9°	120.0°
N3	N2	C10	118.0°	120.0°
N3	N2	C9	122.2°	120.0°
C10	N2	C9	119.6°	120.0°
N2	C10	H4	109.5°	109.5°
N2	C10	H5	109.4°	109.5°
N2	C10	H6	109.5°	109.5°
N2	C9	C4	121.7°	120.0°
N2	C9	C8	119.8°	120.0°
C9	C4	C5	121.7°	120.0°
C4	C9	C8	118.4°	120.0°
C9	C4	H8	119.2°	120.0°
C4	C5	C6	119.7°	120.1°
C4	C5	H7	120.2°	120.0°
C5	C4	H8	119.2°	120.0°
C9	C8	C7	120.0°	119.9°
C9	C8	H1	120.0°	120.1°
C5	C6	C7	119.3°	120.0°
C5	C6	O5	119.5°	120.0°
C6	C5	H7	120.2°	119.9°
C8	C7	C6	121.0°	119.9°
C8	C7	O4	120.9°	120.1°
C7	C8	H1	120.0°	120.0°
C7	C6	O5	121.2°	120.0°
C6	C7	O4	118.1°	120.0°
C6	O5	H2	109.5°	114.0°
C7	O4	H15	109.5°	113.9°
H4	C10	H5	109.5°	109.5°
H4	C10	H6	109.5°	109.5°
H5	C10	H6	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	N3	N2	C10	17.0°	0.0°
O3	N3	N2	C9	157.8°	180.0°
N3	N2	C10	C9	175.0°	179.9°
N3	N2	C9	C4	14.9°	180.0°
N3	N2	C9	C8	167.5°	0.1°
N3	N2	C10	H4	180.0°	90.0°
N3	N2	C10	H5	60.0°	30.0°
N3	N2	C10	H6	60.0°	149.9°
C10	N2	C9	C4	159.8°	0.1°
C10	N2	C9	C8	17.8°	180.0°
N2	C10	H4	H5	120.0°	120.0°
N2	C10	H4	H6	120.0°	120.1°
N2	C10	H5	H6	120.0°	120.0°
N2	C9	C4	C8	177.6°	179.9°
N2	C9	C4	C5	179.3°	179.8°
N2	C9	C8	C7	179.0°	180.0°
C9	N2	C10	H4	5.1°	90.0°
C9	N2	C10	H5	115.0°	150.0°
C9	N2	C10	H6	125.0°	30.0°
N2	C9	C4	H8	0.7°	0.1°
N2	C9	C8	H1	1.0°	0.0°
C9	C4	C5	H8	180.0°	179.7°
C9	C4	C5	C6	1.0°	0.5°
C4	C9	C8	C7	1.3°	0.1°
C9	C4	C5	H7	179.0°	179.9°
C4	C9	C8	H1	178.7°	179.9°
C5	C4	C9	C8	1.7°	0.3°
C4	C5	C6	H7	180.0°	179.6°
C4	C5	C6	C7	0.0°	0.5°
C4	C5	C6	O5	179.6°	179.8°
C9	C8	C7	H1	180.0°	180.0°
C9	C8	C7	C6	0.3°	0.0°
C9	C8	C7	O4	179.3°	180.0°
C8	C9	C4	H8	178.4°	180.0°
C5	C6	C7	C8	0.3°	0.2°
C5	C6	C7	O5	179.6°	179.8°
C5	C6	C7	O4	180.0°	179.8°
C5	C6	O5	H2	180.0°	90.3°
C6	C5	C4	H8	179.0°	179.8°
C8	C7	C6	O4	179.7°	180.0°
C8	C7	C6	O5	179.2°	180.0°
C8	C7	O4	H15	180.0°	90.0°
C7	C6	C5	H7	180.0°	179.9°
C7	C6	O5	H2	0.4°	90.0°
C6	C7	O4	H15	0.3°	90.0°
C6	C7	C8	H1	179.7°	180.0°
O5	C6	C7	O4	0.5°	0.0°
O5	C6	C5	H7	0.4°	0.2°
O4	C7	C8	H1	0.7°	0.0°
H4	C10	H5	H6	120.0°	119.9°
H7	C5	C4	H8	1.0°	0.2°

247536

PDB entries from 2026-01-14

PDB statistics

PDBj update info

Contact PDBj

numon