OHU
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | O5' | sing | 1.61Å | 1.60Å | |
P | OP1 | doub | 1.48Å | 1.50Å | |
P | OP2 | sing | 1.61Å | 1.51Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
N1 | C2 | sing | 1.35Å | 1.42Å | |
N1 | C6 | sing | 1.37Å | 1.34Å | |
N1 | C1' | sing | 1.47Å | 1.47Å | |
C2 | O2 | doub | 1.22Å | 1.25Å | |
C2 | N3 | sing | 1.35Å | 1.35Å | |
N3 | C4 | sing | 1.35Å | 1.35Å | |
C4 | O4 | doub | 1.22Å | 1.25Å | |
C4 | C5 | sing | 1.42Å | 1.48Å | |
C5 | O5 | sing | 1.36Å | 1.36Å | |
C5 | C6 | doub | 1.35Å | 1.38Å | |
C1' | C2' | sing | 1.54Å | 1.52Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
C2' | C3' | sing | 1.55Å | 1.51Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.55Å | 1.51Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
O5 | HO5 | sing | 0.97Å | 0.95Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C2' | H2'A | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O5' | P | OP1 | 108.4° | 109.4° |
O5' | P | OP2 | 106.5° | 109.5° |
O5' | P | OP3 | 103.6° | 109.5° |
P | O5' | C5' | 120.1° | 123.0° |
OP1 | P | OP2 | 119.6° | 109.5° |
OP1 | P | OP3 | 108.3° | 109.5° |
OP2 | P | OP3 | 109.3° | 109.5° |
P | OP2 | HOP2 | 109.5° | 114.0° |
P | OP3 | HOP3 | 109.5° | 113.9° |
C2 | N1 | C6 | 120.9° | 120.6° |
C2 | N1 | C1' | 122.7° | 119.7° |
N1 | C2 | O2 | 120.8° | 119.5° |
N1 | C2 | N3 | 120.7° | 121.0° |
C6 | N1 | C1' | 116.5° | 119.7° |
N1 | C6 | C5 | 120.3° | 119.6° |
N1 | C6 | H6 | 119.8° | 120.2° |
N1 | C1' | C2' | 115.9° | 109.9° |
N1 | C1' | O4' | 111.1° | 109.8° |
N1 | C1' | H1' | 107.9° | 109.9° |
O2 | C2 | N3 | 118.5° | 119.5° |
C2 | N3 | C4 | 120.6° | 120.3° |
C2 | N3 | HN3 | 119.7° | 119.8° |
N3 | C4 | O4 | 120.1° | 120.3° |
N3 | C4 | C5 | 119.3° | 119.4° |
C4 | N3 | HN3 | 119.7° | 119.9° |
O4 | C4 | C5 | 120.6° | 120.3° |
C4 | C5 | O5 | 121.4° | 120.5° |
C4 | C5 | C6 | 118.2° | 119.0° |
O5 | C5 | C6 | 120.4° | 120.4° |
C5 | O5 | HO5 | 109.5° | 114.0° |
C5 | C6 | H6 | 119.8° | 120.2° |
C2' | C1' | O4' | 106.0° | 107.3° |
C1' | C2' | C3' | 100.3° | 104.2° |
C2' | C1' | H1' | 107.2° | 109.9° |
C1' | C2' | H2' | 111.7° | 110.5° |
C1' | C2' | H2'A | 111.7° | 110.5° |
C1' | O4' | C4' | 109.3° | 106.9° |
O4' | C1' | H1' | 108.3° | 110.0° |
C2' | C3' | O3' | 108.2° | 110.9° |
C2' | C3' | C4' | 101.9° | 102.1° |
C3' | C2' | H2' | 111.7° | 110.4° |
C3' | C2' | H2'A | 111.7° | 110.4° |
C2' | C3' | H3' | 112.0° | 110.9° |
O3' | C3' | C4' | 108.6° | 110.9° |
O3' | C3' | H3' | 113.3° | 110.8° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C3' | C4' | O4' | 105.7° | 103.5° |
C3' | C4' | C5' | 110.6° | 110.6° |
C4' | C3' | H3' | 112.0° | 110.9° |
C3' | C4' | H4' | 110.4° | 110.6° |
O4' | C4' | C5' | 108.0° | 110.6° |
O4' | C4' | H4' | 111.7° | 110.6° |
C4' | C5' | O5' | 108.2° | 109.5° |
C5' | C4' | H4' | 110.4° | 110.7° |
C4' | C5' | H5' | 109.8° | 109.4° |
C4' | C5' | H5'A | 109.8° | 109.5° |
O5' | C5' | H5' | 109.8° | 109.4° |
O5' | C5' | H5'A | 109.8° | 109.5° |
H2' | C2' | H2'A | 109.4° | 110.6° |
H5' | C5' | H5'A | 109.4° | 109.6° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | P | OP1 | OP2 | 122.2° | 120.0° |
O5' | P | OP1 | OP3 | 111.8° | 120.0° |
O5' | P | OP2 | OP3 | 111.3° | 120.0° |
P | O5' | C5' | C4' | 178.7° | 180.0° |
P | O5' | C5' | H5' | 61.5° | 60.1° |
P | O5' | C5' | H5'A | 58.9° | 60.0° |
O5' | P | OP2 | HOP2 | 123.1° | 180.0° |
O5' | P | OP3 | HOP3 | 115.0° | 60.0° |
OP1 | P | OP2 | OP3 | 125.5° | 120.0° |
OP1 | P | O5' | C5' | 156.1° | 55.0° |
OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
OP2 | P | O5' | C5' | 74.0° | 175.0° |
OP2 | P | OP3 | HOP3 | 131.8° | 60.0° |
OP3 | P | O5' | C5' | 41.2° | 65.0° |
OP3 | P | OP2 | HOP2 | 125.6° | 60.0° |
C2 | N1 | C6 | C1' | 178.4° | 179.7° |
N1 | C2 | O2 | N3 | 179.5° | 180.0° |
N1 | C2 | N3 | C4 | 0.5° | 0.0° |
C2 | N1 | C6 | C5 | 1.0° | 0.0° |
C2 | N1 | C1' | C2' | 51.8° | 65.0° |
C2 | N1 | C1' | O4' | 69.3° | 52.9° |
N1 | C2 | N3 | HN3 | 179.5° | 180.0° |
C2 | N1 | C6 | H6 | 179.0° | 180.0° |
C2 | N1 | C1' | H1' | 172.0° | 174.0° |
C6 | N1 | C2 | O2 | 179.5° | 180.0° |
C6 | N1 | C2 | N3 | 1.1° | 0.0° |
N1 | C6 | C5 | C4 | 0.5° | 0.0° |
N1 | C6 | C5 | O5 | 179.5° | 180.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
C6 | N1 | C1' | C2' | 129.8° | 114.7° |
C6 | N1 | C1' | O4' | 109.0° | 127.4° |
C6 | N1 | C1' | H1' | 9.6° | 6.3° |
C1' | N1 | C2 | O2 | 1.2° | 0.3° |
C1' | N1 | C2 | N3 | 179.3° | 179.7° |
C1' | N1 | C6 | C5 | 179.4° | 179.7° |
N1 | C1' | C2' | O4' | 123.9° | 119.4° |
N1 | C1' | C2' | H1' | 120.6° | 121.0° |
N1 | C1' | O4' | H1' | 118.4° | 121.1° |
N1 | C1' | C2' | C3' | 157.6° | 121.4° |
N1 | C1' | O4' | C4' | 140.7° | 145.9° |
C1' | N1 | C6 | H6 | 0.6° | 0.3° |
N1 | C1' | C2' | H2' | 83.9° | 119.9° |
N1 | C1' | C2' | H2'A | 39.1° | 2.8° |
O2 | C2 | N3 | C4 | 180.0° | 179.9° |
O2 | C2 | N3 | HN3 | 0.0° | 0.1° |
C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
C2 | N3 | C4 | O4 | 179.9° | 180.0° |
C2 | N3 | C4 | C5 | 0.0° | 0.0° |
N3 | C4 | O4 | C5 | 179.9° | 180.0° |
N3 | C4 | C5 | O5 | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.0° | 0.0° |
O4 | C4 | C5 | O5 | 0.1° | 0.0° |
O4 | C4 | C5 | C6 | 179.9° | 180.0° |
O4 | C4 | N3 | HN3 | 0.2° | 0.0° |
C4 | C5 | O5 | C6 | 180.0° | 180.0° |
C5 | C4 | N3 | HN3 | 180.0° | 180.0° |
C4 | C5 | O5 | HO5 | 0.0° | 0.0° |
C4 | C5 | C6 | H6 | 179.5° | 180.0° |
O5 | C5 | C6 | H6 | 0.5° | 0.0° |
C6 | C5 | O5 | HO5 | 180.0° | 180.0° |
C2' | C1' | O4' | H1' | 114.8° | 119.5° |
C1' | C2' | C3' | H2' | 118.5° | 118.7° |
C1' | C2' | C3' | H2'A | 118.5° | 118.7° |
C1' | C2' | C3' | O3' | 74.6° | 139.1° |
C1' | C2' | C3' | C4' | 39.8° | 20.9° |
C2' | C1' | O4' | C4' | 13.9° | 26.5° |
C1' | C2' | H2' | H2'A | 124.3° | 122.7° |
C1' | C2' | C3' | H3' | 159.8° | 97.3° |
O4' | C1' | C2' | C3' | 33.8° | 2.0° |
C1' | O4' | C4' | C3' | 12.2° | 40.0° |
C1' | O4' | C4' | C5' | 106.2° | 158.6° |
O4' | C1' | C2' | H2' | 152.3° | 120.7° |
O4' | C1' | C2' | H2'A | 84.7° | 116.6° |
C1' | O4' | C4' | H4' | 132.3° | 78.4° |
C2' | C3' | O3' | C4' | 109.9° | 112.7° |
C2' | C3' | O3' | H3' | 124.9° | 123.7° |
C2' | C3' | C4' | H3' | 119.9° | 118.2° |
C2' | C3' | C4' | O4' | 33.2° | 37.0° |
C2' | C3' | C4' | C5' | 83.4° | 155.5° |
C3' | C2' | C1' | H1' | 81.8° | 117.5° |
C3' | C2' | H2' | H2'A | 124.2° | 122.5° |
C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
C2' | C3' | C4' | H4' | 154.1° | 81.4° |
O3' | C3' | C4' | H3' | 126.0° | 123.6° |
O3' | C3' | C4' | O4' | 80.9° | 155.2° |
O3' | C3' | C4' | C5' | 162.5° | 86.3° |
O3' | C3' | C2' | H2' | 43.9° | 20.4° |
O3' | C3' | C2' | H2'A | 166.9° | 102.3° |
O3' | C3' | C4' | H4' | 40.0° | 36.8° |
C3' | C4' | O4' | C5' | 118.4° | 118.5° |
C3' | C4' | O4' | H4' | 120.1° | 118.5° |
C3' | C4' | C5' | H4' | 122.5° | 123.0° |
C3' | C4' | C5' | O5' | 79.3° | 175.0° |
C4' | C3' | C2' | H2' | 158.4° | 97.8° |
C4' | C3' | C2' | H2'A | 78.7° | 139.6° |
C4' | C3' | O3' | HO3' | 70.1° | 174.2° |
C3' | C4' | C5' | H5' | 40.5° | 55.0° |
C3' | C4' | C5' | H5'A | 160.9° | 65.0° |
O4' | C4' | C5' | H4' | 122.3° | 122.9° |
O4' | C4' | C5' | O5' | 165.5° | 70.9° |
C4' | O4' | C1' | H1' | 100.9° | 93.0° |
O4' | C4' | C3' | H3' | 153.1° | 81.2° |
O4' | C4' | C5' | H5' | 74.7° | 169.1° |
O4' | C4' | C5' | H5'A | 45.7° | 49.1° |
C4' | C5' | O5' | H5' | 119.8° | 119.9° |
C4' | C5' | O5' | H5'A | 119.8° | 120.0° |
C5' | C4' | C3' | H3' | 36.5° | 37.3° |
C4' | C5' | H5' | H5'A | 120.6° | 120.0° |
O5' | C5' | C4' | H4' | 43.2° | 52.0° |
O5' | C5' | H5' | H5'A | 120.6° | 120.1° |
H1' | C1' | C2' | H2' | 36.7° | 1.1° |
H1' | C1' | C2' | H2'A | 159.7° | 123.8° |
H2' | C2' | C3' | H3' | 81.7° | 144.0° |
H2'A | C2' | C3' | H3' | 41.2° | 21.4° |
H3' | C3' | O3' | HO3' | 55.1° | 62.2° |
H3' | C3' | C4' | H4' | 86.0° | 160.3° |
H4' | C4' | C5' | H5' | 163.0° | 68.0° |
H4' | C4' | C5' | H5'A | 76.7° | 172.0° |