O84

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O11	P2	doub	1.48Å	1.56Å
O6	C6	doub	1.22Å	1.25Å
O9	P2	sing	1.61Å	1.52Å
P2	O10	sing	1.61Å	1.51Å
P2	C19	sing	1.82Å	1.75Å
C18	C19	sing	1.51Å	1.48Å
C18	C17	doub	1.33Å	1.26Å
C6	N1	sing	1.35Å	1.38Å
C6	C5	sing	1.47Å	1.42Å
N1	C8	sing	1.34Å	1.37Å
C17	C5	sing	1.48Å	1.48Å
C5	C4	doub	1.37Å	1.34Å
C8	O2	doub	1.22Å	1.28Å
C8	N9	sing	1.34Å	1.36Å
C4	N9	sing	1.36Å	1.40Å
N9	C1'	sing	1.46Å	1.47Å
C1'	C2'	sing	1.55Å	1.56Å
C1'	O4'	sing	1.43Å	1.38Å
C2'	C3'	sing	1.55Å	1.52Å
C11	C12	doub	1.38Å	1.40Å	Aromatic
C11	C10	sing	1.38Å	1.38Å	Aromatic
O4'	C4'	sing	1.44Å	1.44Å
C12	C2	sing	1.38Å	1.39Å	Aromatic
O3'	C3'	sing	1.41Å	1.44Å
O3'	CAB	sing	1.43Å	1.44Å
C3'	C4'	sing	1.54Å	1.52Å
C10	C9	doub	1.38Å	1.39Å	Aromatic
C4'	C5'	sing	1.53Å	1.52Å
C2	CAB	sing	1.51Å	1.51Å
C2	CAA	doub	1.38Å	1.38Å	Aromatic
C9	CAA	sing	1.38Å	1.41Å	Aromatic
CAB	O7	sing	1.43Å	1.38Å
CAB	P	sing	1.82Å	1.82Å
O7	C5'	sing	1.43Å	1.41Å
OP1	P	doub	1.48Å	1.48Å
P	OP2	sing	1.61Å	1.47Å
P	OP3	sing	1.61Å	1.55Å
OP2	H1	sing	0.97Å	0.95Å
OP3	H2	sing	0.97Å	0.95Å
CAA	H3	sing	1.08Å	1.08Å
C9	H4	sing	1.08Å	1.08Å
C10	H5	sing	1.08Å	1.08Å
C11	H6	sing	1.08Å	1.08Å
C12	H7	sing	1.08Å	1.08Å
C5'	H8	sing	1.09Å	1.10Å
C5'	H9	sing	1.09Å	1.10Å
C4'	H10	sing	1.09Å	1.10Å
C3'	H11	sing	1.09Å	1.10Å
C2'	H12	sing	1.09Å	1.10Å
C2'	H13	sing	1.09Å	1.10Å
C1'	H14	sing	1.09Å	1.10Å
C4	H15	sing	1.08Å	1.08Å
N1	H16	sing	0.97Å	1.00Å
C17	H17	sing	1.08Å	1.08Å
C18	H18	sing	1.08Å	1.08Å
C19	H19	sing	1.09Å	1.10Å
C19	H20	sing	1.09Å	1.10Å
O9	H21	sing	0.97Å	0.95Å
O10	H22	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O11	P2	O9	107.3°	109.5°
O11	P2	O10	111.0°	109.4°
O11	P2	C19	109.4°	109.5°
O6	C6	N1	112.7°	120.7°
O6	C6	C5	128.2°	120.7°
O9	P2	O10	112.1°	109.5°
O9	P2	C19	106.4°	109.5°
P2	O9	H21	109.5°	114.0°
O10	P2	C19	110.4°	109.5°
P2	O10	H22	109.5°	114.0°
P2	C19	C18	110.2°	109.5°
P2	C19	H19	109.3°	109.5°
P2	C19	H20	109.3°	109.5°
C19	C18	C17	123.0°	120.0°
C19	C18	H18	118.5°	120.0°
C18	C19	H19	109.3°	109.4°
C18	C19	H20	109.3°	109.5°
C18	C17	C5	131.1°	120.0°
C18	C17	H17	114.5°	120.0°
C17	C18	H18	118.5°	120.0°
N1	C6	C5	118.9°	118.7°
C6	N1	C8	122.2°	120.3°
C6	N1	H16	118.9°	119.8°
C6	C5	C17	127.1°	120.9°
C6	C5	C4	116.7°	118.3°
N1	C8	O2	119.2°	119.0°
N1	C8	N9	118.6°	121.9°
C8	N1	H16	118.9°	119.8°
C17	C5	C4	116.0°	120.9°
C5	C17	H17	114.4°	120.0°
C5	C4	N9	123.5°	119.5°
C5	C4	H15	118.3°	120.3°
O2	C8	N9	122.2°	119.0°
C8	N9	C4	119.2°	121.4°
C8	N9	C1'	119.4°	119.3°
C4	N9	C1'	121.4°	119.3°
N9	C4	H15	118.2°	120.3°
N9	C1'	C2'	111.4°	109.9°
N9	C1'	O4'	112.4°	109.8°
N9	C1'	H14	108.0°	109.9°
C2'	C1'	O4'	108.7°	107.6°
C1'	C2'	C3'	101.9°	101.8°
C1'	C2'	H12	111.3°	111.0°
C1'	C2'	H13	111.3°	111.0°
C2'	C1'	H14	106.8°	109.9°
C1'	O4'	C4'	109.5°	109.7°
O4'	C1'	H14	109.2°	109.8°
C2'	C3'	O3'	106.4°	111.7°
C2'	C3'	C4'	104.0°	101.5°
C2'	C3'	H11	111.2°	110.9°
C3'	C2'	H12	111.3°	111.0°
C3'	C2'	H13	111.3°	111.0°
C12	C11	C10	118.8°	120.0°
C11	C12	C2	121.1°	120.0°
C12	C11	H6	120.6°	120.0°
C11	C12	H7	119.5°	119.9°
C11	C10	C9	120.6°	120.0°
C11	C10	H5	119.7°	119.9°
C10	C11	H6	120.6°	120.0°
O4'	C4'	C3'	104.1°	104.2°
O4'	C4'	C5'	104.0°	107.0°
O4'	C4'	H10	111.0°	111.5°
C12	C2	CAB	121.8°	120.0°
C12	C2	CAA	120.0°	120.0°
C2	C12	H7	119.4°	120.1°
C3'	O3'	CAB	116.6°	115.9°
O3'	C3'	C4'	111.1°	112.5°
O3'	C3'	H11	112.5°	110.0°
O3'	CAB	C2	103.7°	109.8°
O3'	CAB	O7	107.8°	108.2°
O3'	CAB	P	113.8°	109.7°
C3'	C4'	C5'	117.7°	110.0°
C3'	C4'	H10	109.8°	112.3°
C4'	C3'	H11	111.2°	110.0°
C10	C9	CAA	120.1°	120.0°
C10	C9	H4	120.0°	120.0°
C9	C10	H5	119.7°	120.1°
C4'	C5'	O7	109.0°	110.3°
C4'	C5'	H8	109.6°	109.3°
C4'	C5'	H9	109.6°	109.2°
C5'	C4'	H10	109.8°	111.4°
CAB	C2	CAA	118.1°	120.0°
C2	CAB	O7	109.5°	109.8°
C2	CAB	P	108.9°	109.7°
C2	CAA	C9	119.3°	120.0°
C2	CAA	H3	120.3°	120.0°
C9	CAA	H3	120.4°	120.0°
CAA	C9	H4	119.9°	120.0°
O7	CAB	P	112.6°	109.7°
CAB	O7	C5'	122.3°	112.7°
CAB	P	OP1	108.5°	109.4°
CAB	P	OP2	112.6°	109.5°
CAB	P	OP3	102.8°	109.5°
O7	C5'	H8	109.6°	109.3°
O7	C5'	H9	109.6°	109.4°
OP1	P	OP2	112.6°	109.5°
OP1	P	OP3	109.1°	109.5°
OP2	P	OP3	110.8°	109.5°
P	OP2	H1	109.5°	114.0°
P	OP3	H2	109.5°	114.0°
H8	C5'	H9	109.5°	109.3°
H12	C2'	H13	109.5°	110.8°
H19	C19	H20	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O11	P2	O9	O10	122.2°	120.0°
O11	P2	O9	C19	117.0°	120.0°
O11	P2	O10	C19	121.5°	120.0°
O11	P2	C19	C18	53.6°	55.0°
O11	P2	C19	H19	66.5°	65.0°
O11	P2	C19	H20	173.7°	175.0°
O11	P2	O9	H21	0.0°	60.0°
O11	P2	O10	H22	0.0°	180.0°
O6	C6	N1	C5	176.7°	179.7°
O6	C6	N1	C8	174.7°	180.0°
O6	C6	C5	C17	0.9°	0.2°
O6	C6	C5	C4	175.3°	180.0°
O6	C6	N1	H16	5.3°	0.0°
O9	P2	O10	C19	118.5°	120.0°
O9	P2	C19	C18	169.3°	175.0°
O9	P2	C19	H19	49.2°	55.0°
O9	P2	C19	H20	70.6°	65.0°
O9	P2	O10	H22	120.1°	60.0°
O10	P2	C19	C18	68.8°	65.0°
O10	P2	C19	H19	171.1°	175.1°
O10	P2	C19	H20	51.3°	55.1°
O10	P2	O9	H21	122.2°	60.0°
P2	C19	C18	H19	120.1°	119.9°
P2	C19	C18	H20	120.1°	120.0°
P2	C19	C18	C17	139.6°	125.0°
P2	C19	C18	H18	40.5°	55.0°
P2	C19	H19	H20	119.7°	120.0°
C19	P2	O9	H21	117.0°	180.0°
C19	P2	O10	H22	121.5°	60.1°
C19	C18	C17	H18	180.0°	180.0°
C19	C18	C17	C5	177.9°	174.8°
C19	C18	C17	H17	2.1°	5.2°
C18	C19	H19	H20	119.7°	120.1°
C18	C17	C5	C6	12.6°	5.1°
C18	C17	C5	H17	180.0°	180.0°
C18	C17	C5	C4	163.6°	174.6°
C17	C18	C19	H19	100.3°	115.0°
C17	C18	C19	H20	19.5°	5.0°
C6	N1	C8	H16	180.0°	179.9°
N1	C6	C5	C17	175.2°	180.0°
N1	C6	C5	C4	8.6°	0.3°
C6	N1	C8	O2	179.9°	180.0°
C6	N1	C8	N9	0.8°	0.0°
C5	C6	N1	C8	8.6°	0.3°
C6	C5	C17	C4	176.2°	179.7°
C6	C5	C4	N9	1.4°	0.0°
C6	C5	C4	H15	178.6°	179.9°
C5	C6	N1	H16	171.4°	179.8°
C6	C5	C17	H17	167.4°	174.9°
N1	C8	O2	N9	179.3°	179.9°
N1	C8	N9	C4	6.6°	0.3°
N1	C8	N9	C1'	172.6°	180.0°
C17	C5	C4	N9	178.0°	179.7°
C17	C5	C4	H15	2.0°	0.2°
C5	C17	C18	H18	2.1°	5.2°
C5	C4	N9	C8	6.4°	0.3°
C5	C4	N9	H15	180.0°	179.9°
C5	C4	N9	C1'	172.7°	179.9°
C4	C5	C17	H17	16.4°	5.4°
O2	C8	N9	C4	172.7°	179.7°
O2	C8	N9	C1'	8.1°	0.1°
O2	C8	N1	H16	0.1°	0.0°
C8	N9	C4	C1'	179.1°	179.6°
C8	N9	C1'	C2'	143.1°	75.3°
C8	N9	C1'	O4'	94.5°	166.6°
C8	N9	C1'	H14	26.0°	45.7°
C8	N9	C4	H15	173.6°	179.7°
N9	C8	N1	H16	179.2°	179.9°
C4	N9	C1'	C2'	36.0°	104.4°
C4	N9	C1'	O4'	86.3°	13.7°
C4	N9	C1'	H14	153.1°	134.6°
N9	C1'	C2'	O4'	124.5°	119.5°
N9	C1'	C2'	H14	117.8°	121.0°
N9	C1'	O4'	H14	119.9°	120.9°
N9	C1'	C2'	C3'	118.3°	140.3°
N9	C1'	O4'	C4'	139.7°	116.2°
N9	C1'	C2'	H12	122.9°	22.2°
N9	C1'	C2'	H13	0.4°	101.5°
C1'	N9	C4	H15	7.3°	0.1°
C2'	C1'	O4'	H14	116.2°	119.5°
C1'	C2'	C3'	H12	118.8°	118.1°
C1'	C2'	C3'	H13	118.8°	118.2°
C2'	C1'	O4'	C4'	15.9°	3.4°
C1'	C2'	C3'	O3'	93.4°	155.2°
C1'	C2'	C3'	C4'	24.0°	35.2°
C1'	C2'	C3'	H11	143.8°	81.7°
C1'	C2'	H12	H13	123.5°	123.8°
O4'	C1'	C2'	C3'	6.1°	20.8°
C1'	O4'	C4'	C3'	31.4°	26.4°
C1'	O4'	C4'	C5'	155.3°	90.1°
C1'	O4'	C4'	H10	86.7°	147.8°
O4'	C1'	C2'	H12	112.6°	97.3°
O4'	C1'	C2'	H13	124.9°	139.0°
C2'	C3'	C4'	O4'	34.1°	38.3°
C2'	C3'	O3'	C4'	112.6°	113.4°
C2'	C3'	O3'	H11	122.0°	123.6°
C2'	C3'	O3'	CAB	159.4°	63.4°
C2'	C3'	C4'	H11	119.7°	117.5°
C2'	C3'	C4'	C5'	148.6°	76.1°
C2'	C3'	C4'	H10	84.8°	159.1°
C3'	C2'	H12	H13	123.5°	123.8°
C3'	C2'	C1'	H14	123.9°	98.7°
C12	C11	C10	H6	180.0°	179.4°
C11	C12	C2	H7	180.0°	179.4°
C12	C11	C10	C9	4.2°	0.3°
C11	C12	C2	CAB	178.7°	179.7°
C11	C12	C2	CAA	0.5°	0.6°
C12	C11	C10	H5	175.8°	179.7°
C10	C11	C12	C2	1.9°	0.6°
C11	C10	C9	H5	180.0°	180.0°
C11	C10	C9	CAA	4.0°	0.0°
C11	C10	C9	H4	176.1°	180.0°
C10	C11	C12	H7	178.1°	180.0°
O4'	C4'	C3'	O3'	80.0°	157.8°
O4'	C4'	C3'	C5'	114.5°	114.4°
O4'	C4'	C3'	H10	119.0°	120.8°
O4'	C4'	C5'	H10	118.9°	122.2°
O4'	C4'	C5'	O7	82.7°	161.0°
O4'	C4'	C5'	H8	37.2°	78.8°
O4'	C4'	C5'	H9	157.4°	40.8°
O4'	C4'	C3'	H11	153.9°	79.1°
C4'	O4'	C1'	H14	100.4°	122.9°
C12	C2	CAB	O3'	29.8°	50.2°
C12	C2	CAB	CAA	179.3°	179.7°
C12	C2	CAA	C9	0.8°	0.3°
C12	C2	CAB	O7	144.7°	169.0°
C12	C2	CAB	P	91.7°	70.4°
C12	C2	CAA	H3	179.2°	179.7°
C2	C12	C11	H6	178.1°	180.0°
O3'	C3'	C4'	H11	126.2°	123.0°
O3'	C3'	C4'	C5'	34.5°	43.4°
C3'	O3'	CAB	C2	171.8°	61.8°
C3'	O3'	CAB	O7	55.8°	57.9°
C3'	O3'	CAB	P	69.9°	177.5°
O3'	C3'	C4'	H10	161.0°	81.4°
O3'	C3'	C2'	H12	147.8°	37.1°
O3'	C3'	C2'	H13	25.4°	86.6°
CAB	O3'	C3'	C4'	46.8°	50.0°
O3'	CAB	C2	O7	114.9°	118.8°
O3'	CAB	C2	P	121.6°	120.6°
O3'	CAB	C2	CAA	150.9°	130.1°
O3'	CAB	O7	P	126.4°	119.6°
O3'	CAB	O7	C5'	57.0°	62.9°
O3'	CAB	P	OP1	67.7°	173.7°
O3'	CAB	P	OP2	57.6°	53.7°
O3'	CAB	P	OP3	176.8°	66.3°
CAB	O3'	C3'	H11	78.6°	173.0°
C3'	C4'	C5'	H10	126.5°	125.2°
C3'	C4'	C5'	O7	31.9°	48.4°
C3'	C4'	C5'	H8	151.8°	168.6°
C3'	C4'	C5'	H9	88.0°	71.8°
C4'	C3'	C2'	H12	94.7°	83.0°
C4'	C3'	C2'	H13	142.8°	153.3°
C10	C9	CAA	C2	1.4°	0.0°
C10	C9	CAA	H4	180.0°	179.9°
C10	C9	CAA	H3	178.6°	180.0°
C9	C10	C11	H6	175.9°	179.7°
C4'	C5'	O7	CAB	45.5°	60.2°
C4'	C5'	O7	H8	119.9°	120.2°
C4'	C5'	O7	H9	119.9°	120.1°
C4'	C5'	H8	H9	120.2°	119.5°
C5'	C4'	C3'	H11	91.6°	166.4°
CAB	C2	CAA	C9	178.5°	180.0°
C2	CAB	O7	P	121.4°	120.7°
C2	CAB	O7	C5'	169.2°	56.8°
C2	CAB	P	OP1	47.5°	65.6°
C2	CAB	P	OP2	172.8°	174.4°
C2	CAB	P	OP3	68.0°	54.3°
CAB	C2	CAA	H3	1.5°	0.0°
CAB	C2	C12	H7	1.3°	0.3°
C2	CAA	C9	H3	180.0°	180.0°
CAA	C2	CAB	O7	36.0°	11.4°
CAA	C2	CAB	P	87.5°	109.3°
C2	CAA	C9	H4	178.6°	179.9°
CAA	C2	C12	H7	179.5°	179.9°
CAA	C9	C10	H5	176.0°	180.0°
O7	CAB	P	OP1	169.2°	55.1°
O7	CAB	P	OP2	65.5°	65.0°
O7	CAB	P	OP3	53.7°	175.0°
CAB	O7	C5'	H8	165.4°	179.6°
CAB	O7	C5'	H9	74.4°	59.9°
P	CAB	O7	C5'	69.4°	177.5°
CAB	P	OP1	OP2	125.3°	120.0°
CAB	P	OP1	OP3	111.3°	120.0°
CAB	P	OP2	OP3	114.5°	120.0°
CAB	P	OP2	H1	123.1°	180.0°
CAB	P	OP3	H2	115.0°	60.0°
O7	C5'	H8	H9	120.2°	119.7°
O7	C5'	C4'	H10	158.4°	76.9°
OP1	P	OP2	OP3	122.5°	120.0°
OP1	P	OP2	H1	0.0°	60.0°
OP1	P	OP3	H2	0.0°	180.0°
OP2	P	OP3	H2	124.5°	60.0°
OP3	P	OP2	H1	122.4°	60.0°
H3	CAA	C9	H4	1.4°	0.0°
H4	C9	C10	H5	4.0°	0.1°
H5	C10	C11	H6	4.2°	0.3°
H6	C11	C12	H7	1.9°	0.6°
H8	C5'	C4'	H10	81.7°	43.3°
H9	C5'	C4'	H10	38.5°	162.9°
H10	C4'	C3'	H11	34.9°	41.7°
H11	C3'	C2'	H12	25.0°	160.2°
H11	C3'	C2'	H13	97.5°	36.5°
H12	C2'	C1'	H14	5.1°	143.2°
H13	C2'	C1'	H14	117.4°	19.5°
H17	C17	C18	H18	177.9°	174.8°
H18	C18	C19	H19	79.6°	65.0°
H18	C18	C19	H20	160.5°	175.0°

Release date:	2018-07-11
Definition date:	2018-03-23
Last modified:	2018-07-06
Release status:	REL
Processing site:	EBI
Derived from:	6G2M